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comparison fastq_trimmer.py @ 2:fdff6f6a8763 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_trimmer commit de7140295cce07e1bc1697e51dab4271c8d7a8a6
author devteam
date Fri, 18 Dec 2015 19:31:05 -0500
parents feb5479a48ff
children
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1:3be753901f6e 2:fdff6f6a8763
19 left_column_offset = int( round( float( left_offset ) / 100.0 * float( len( fastq_read ) ) ) ) 19 left_column_offset = int( round( float( left_offset ) / 100.0 * float( len( fastq_read ) ) ) )
20 right_column_offset = int( round( float( right_offset ) / 100.0 * float( len( fastq_read ) ) ) ) 20 right_column_offset = int( round( float( right_offset ) / 100.0 * float( len( fastq_read ) ) ) )
21 else: 21 else:
22 left_column_offset = int( left_offset ) 22 left_column_offset = int( left_offset )
23 right_column_offset = int( right_offset ) 23 right_column_offset = int( right_offset )
24 if right_column_offset > 0: 24 if right_column_offset != 0:
25 right_column_offset = -right_column_offset 25 right_column_offset = -right_column_offset
26 else: 26 else:
27 right_column_offset = None 27 right_column_offset = None
28 fastq_read = fastq_read.slice( left_column_offset, right_column_offset ) 28 fastq_read = fastq_read.slice( left_column_offset, right_column_offset )
29 if keep_zero_length or len( fastq_read ): 29 if keep_zero_length or len( fastq_read ):