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comparison fastq_to_fasta.xml @ 4:5dbca5fbdc45 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastq_to_fasta commit 4c002e52261da2e7609735883d91fa1610ce6ce7"
author iuc
date Thu, 30 Jan 2020 18:26:18 +0000
parents 4498e994e31b
children b8e3c0a52f33
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3:4498e994e31b 4:5dbca5fbdc45
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 @CATS@ fastq_to_fasta 8 @CATS@ fastq_to_fasta
9 $SKIPN 9 $SKIPN
10 $RENAMESEQ 10 $RENAMESEQ
11 -o '$output'
12 -v @FQQUAL@ 11 -v @FQQUAL@
13 @GZIP@ 12 @GZIP@ > '$output'
14 ]]></command> 13 ]]></command>
15 <inputs> 14 <inputs>
16 <expand macro="fastq_input" /> 15 <expand macro="fastq_input" />
17 <param name="SKIPN" type="select" label="Discard sequences with unknown (N) bases "> 16 <param name="SKIPN" type="select" label="Discard sequences with unknown (N) bases ">
18 <option value="">yes</option> 17 <option value="">yes</option>