Mercurial > repos > devteam > fastq_paired_end_splitter
diff fastq_paired_end_splitter.xml @ 8:344ecd827be8 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/galaxy_sequence_utils/fastq_paired_end_splitter commit a5766d27dcddd1891766476a913d0eae1ec7a3c9
| author | iuc |
|---|---|
| date | Sun, 23 Nov 2025 17:49:36 +0000 |
| parents | c47ce50a06e5 |
| children |
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--- a/fastq_paired_end_splitter.xml Fri Oct 04 10:33:49 2024 +0000 +++ b/fastq_paired_end_splitter.xml Sun Nov 23 17:49:36 2025 +0000 @@ -11,20 +11,21 @@ </edam_operations> <expand macro="requirements"/> <command><![CDATA[ -gx-fastq-paired-end-splitter '$input1_file' '${input1_file.extension[len('fastq'):]}' '$output1_file' '$output2_file' +gx-fastq-paired-end-splitter '$input1_file' '${input1_file.extension[len('fastq'):]}' '$pairs.forward' '$pairs.reverse' ]]></command> <inputs> <param name="input1_file" type="data" format="fastqsanger,fastqcssanger,fastqsanger.gz,fastqcssanger.gz,fastqsanger.bz2,fastqcssanger.bz2" label="FASTQ reads" /> </inputs> <outputs> - <data name="output1_file" format_source="input1_file" label="${tool.name} on ${on_string}: Forward"/> - <data name="output2_file" format_source="input1_file" label="${tool.name} on ${on_string}: Reverse"/> + <collection name="pairs" format_source="input1_file" type="paired" label="${tool.name} on ${on_string}"/> </outputs> <tests> <test> <param name="input1_file" value="3.fastqsanger" ftype="fastqsanger" /> - <output name="output1_file" file="split_pair_reads_1.fastqsanger" ftype="fastqsanger" /> - <output name="output2_file" file="split_pair_reads_2.fastqsanger" ftype="fastqsanger" /> + <output_collection name="pairs"> + <element name="forward" value="split_pair_reads_1.fastqsanger" ftype="fastqsanger"/> + <element name="reverse" value="split_pair_reads_2.fastqsanger" ftype="fastqsanger"/> + </output_collection> </test> </tests> <help><![CDATA[