# HG changeset patch
# User devteam
# Date 1507384817 14400
# Node ID f408707593beeddd1ca21b4650c07e5b419abe4a
# Parent  64fa25e9b916efd3f9e9b7bc6ed6835beb238059
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/galaxy_sequence_utils/fastq_paired_end_deinterlacer commit 28c441e8aa66a55d276b0f6325d34086eb715872

diff -r 64fa25e9b916 -r f408707593be fastq_paired_end_deinterlacer.xml
--- a/fastq_paired_end_deinterlacer.xml	Sat Sep 30 14:56:49 2017 -0400
+++ b/fastq_paired_end_deinterlacer.xml	Sat Oct 07 10:00:17 2017 -0400
@@ -1,7 +1,7 @@
-<tool id="fastq_paired_end_deinterlacer" name="FASTQ de-interlacer" version="1.1.1">
+<tool id="fastq_paired_end_deinterlacer" name="FASTQ de-interlacer" version="1.1.2">
     <description>on paired end reads</description>
     <requirements>
-        <requirement type="package" version="1.1.1">galaxy_sequence_utils</requirement>
+        <requirement type="package" version="1.1.2">galaxy_sequence_utils</requirement>
     </requirements>
     <command><![CDATA[
 gx-fastq-paired-end-deinterlacer '$input_file' '${input_file.extension[len('fastq'):]}' '$output1_pairs_file' '$output2_pairs_file' '$output1_singles_file' '$output2_singles_file'
@@ -30,6 +30,20 @@
             <output name="output1_singles_file" file="paired_end_1_cleaned_singles.fastqsanger" ftype="fastqsanger" />
             <output name="output2_singles_file" file="paired_end_2_cleaned_singles.fastqsanger" ftype="fastqsanger" />
         </test>
+        <test>
+            <param name="input_file" value="paired_end_merged_errors.fastqsanger.gz" ftype="fastqsanger.gz" />
+            <output name="output1_pairs_file" file="paired_end_1_cleaned.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
+            <output name="output2_pairs_file" file="paired_end_2_cleaned.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
+            <output name="output1_singles_file" file="paired_end_1_cleaned_singles.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
+            <output name="output2_singles_file" file="paired_end_2_cleaned_singles.fastqsanger" ftype="fastqsanger.gz" decompress="true" />
+        </test>
+        <test>
+            <param name="input_file" value="paired_end_merged_errors.fastqsanger.bz2" ftype="fastqsanger.bz2" />
+            <output name="output1_pairs_file" file="paired_end_1_cleaned.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
+            <output name="output2_pairs_file" file="paired_end_2_cleaned.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
+            <output name="output1_singles_file" file="paired_end_1_cleaned_singles.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
+            <output name="output2_singles_file" file="paired_end_2_cleaned_singles.fastqsanger" ftype="fastqsanger.bz2" decompress="true" />
+        </test>
     </tests>
     <help><![CDATA[
 **What it does**
diff -r 64fa25e9b916 -r f408707593be test-data/paired_end_merged_errors.fastqsanger.bz2
Binary file test-data/paired_end_merged_errors.fastqsanger.bz2 has changed
diff -r 64fa25e9b916 -r f408707593be test-data/paired_end_merged_errors.fastqsanger.gz
Binary file test-data/paired_end_merged_errors.fastqsanger.gz has changed