Mercurial > repos > devteam > emboss_5
view emboss_single_outputfile_wrapper.pl @ 15:dbd24c72f166 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit fed02ef07e0a45f0d5a89cdca364607ab8da6cf9
author | iuc |
---|---|
date | Mon, 28 Jan 2019 11:20:53 -0500 |
parents | 9b98d3d903c6 |
children | bde3097ac0f6 |
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#! /usr/bin/perl -w use strict; use File::Copy; my $cmd_string = join (" ",@ARGV); my $results = `$cmd_string`; my @files = split("\n",$results); my $fileNameOut = $ARGV[6]; my ($drive, $outputDir, $file) = File::Spec->splitpath( $fileNameOut ); my $destination = $fileNameOut; foreach my $thisLine (@files) { if ($thisLine =~ /Created /) { $thisLine =~ /[\w|\.]+$/; $thisLine =$&; #print "outfile: $thisLine\n"; #there is only one file to move, so we can quit after finding it move($drive.$outputDir.$thisLine,$fileNameOut); exit(1); } else { print $thisLine,"\n"; } }