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view emboss_banana.pl @ 10:9b98d3d903c6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
author devteam
date Fri, 12 Aug 2016 19:17:10 -0400
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#! /usr/bin/perl -w
use strict;

my $cmd_string = join (" ",@ARGV);
#my $cmd_string = "/home/djb396/temp/emboss/bin/banana -sequence /home/djb396/universe-prototype/test.fasta -outfile result.txt -graph png -goutfile results -auto";
my $results = `$cmd_string`;
my @files = split("\n",$results);
foreach my $thisLine (@files)
{
	if ($thisLine =~ /Created /i)
	{
		$thisLine =~ /[\w|\.]+$/;
		$thisLine =$&;
		print "outfile: $thisLine\n";
	}
}