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comparison emboss_cirdna.xml @ 10:9b98d3d903c6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/emboss_5 commit fc158bfe5f5927dc199321a2cf43310373cbc8ba
author devteam
date Fri, 12 Aug 2016 19:17:10 -0400
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9:18a63c800a4d 10:9b98d3d903c6
1 <tool id="EMBOSS: cirdna11" name="cirdna" version="5.0.0">
2 <description>Draws circular maps of DNA constructs</description>
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements>
4 <command interpreter="perl">emboss_single_outputfile_wrapper.pl cirdna -infile $input1 -graphout png -goutfile $out_file1 -auto</command>
5 <inputs>
6 <param format="data" name="input1" type="data">
7 <label>On query</label>
8 </param>
9 </inputs>
10 <outputs>
11 <data format="png" name="out_file1" />
12 </outputs>
13 <!-- <tests>
14 <test>
15 puts name of file into the png
16 </test>
17 </tests> -->
18 <help>
19 You can view the original documentation here_.
20
21 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/cirdna.html
22
23 ------
24
25 **Citation**
26
27 For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. &lt;http://www.ncbi.nlm.nih.gov/pubmed/10827456&gt;`_
28
29 If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
30 </help>
31 </tool>