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comparison emboss_geecee.xml @ 11:0e2484b6829b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/emboss_5 commit b583bbeb8fc90cd4b1e987a56982e7cf4aed1a68
author iuc
date Mon, 30 Jan 2017 13:27:40 -0500
parents 9b98d3d903c6
children 27c43fb015f0
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10:9b98d3d903c6 11:0e2484b6829b
1 <tool id="EMBOSS: geecee41" name="geecee" version="5.0.0"> 1 <tool id="EMBOSS: geecee41" name="geecee" version="5.0.0">
2 <description>Calculates fractional GC content of nucleic acid sequences</description> 2 <description>Calculates fractional GC content of nucleic acid sequences</description>
3 <requirements><requirement type="package" version="5.0.0">emboss</requirement></requirements> 3 <macros>
4 <command>geecee -sequence $input1 -outfile $out_file1 -auto</command> 4 <import>macros.xml</import>
5 </macros>
6 <expand macro="requirements" />
7 <command>geecee -sequence '$input1' -outfile '$out_file1' -auto</command>
5 <inputs> 8 <inputs>
6 <param format="data" name="input1" type="data"> 9 <param name="input1" type="data" format="data" label="Sequences" />
7 <label>Sequences</label>
8 </param>
9 </inputs> 10 </inputs>
10 <outputs> 11 <outputs>
11 <data format="geecee" name="out_file1" /> 12 <data name="out_file1" format="geecee" />
12 </outputs> 13 </outputs>
13 <tests> 14 <tests>
14 <test> 15 <test>
15 <param name="input1" value="2.fasta"/> 16 <param name="input1" value="2.fasta"/>
16 <output name="out_file1" file="emboss_geecee_out.geecee"/> 17 <output name="out_file1" file="emboss_geecee_out.geecee"/>
17 </test> 18 </test>
18 </tests> 19 </tests>
19 <help> 20 <help>
20 You can view the original documentation here_. 21 You can view the original documentation here_.
21
22 .. _here: http://emboss.sourceforge.net/apps/release/5.0/emboss/apps/geecee.html
23 22
24 ------ 23 .. _here: http://galaxy-iuc.github.io/emboss-5.0-docs/geecee.html
25
26 **Citation**
27
28 For the underlying tool, please cite `Rice P, Longden I, Bleasby A. EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet. 2000 Jun;16(6):276-7. &lt;http://www.ncbi.nlm.nih.gov/pubmed/10827456&gt;`_
29
30 If you use this tool in Galaxy, please cite `Blankenberg D, Taylor J, Schenck I, He J, Zhang Y, Ghent M, Veeraraghavan N, Albert I, Miller W, Makova KD, Hardison RC, Nekrutenko A. A framework for collaborative analysis of ENCODE data: making large-scale analyses biologist-friendly. Genome Res. 2007 Jun;17(6):960-4. &lt;http://www.ncbi.nlm.nih.gov/pubmed/17568012&gt;`_
31 </help> 24 </help>
25 <expand macro="citations" />
32 </tool> 26 </tool>