Mercurial > repos > devteam > emboss_5

annotate test-data/emboss_compseq_out.compseq @ 1:a74a91f0ca4a

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Uploaded emboss_testdata.tar
author devteam
date Tue, 05 Jun 2012 14:00:15 -0400
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a74a91f0ca4a Uploaded emboss_testdata.tar
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1 #
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2 # Output from 'compseq'
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3 #
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4 # The Expected frequencies are calculated on the (false) assumption that every
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5 # word has equal frequency.
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6 #
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7 # The input sequences are:
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8 # Sequence
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11 Word size 2
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12 Total count 560
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14 #
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15 # Word Obs Count Obs Frequency Exp Frequency Obs/Exp Frequency
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16 #
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17 AA 40 0.0714286 0.0625000 1.1428571
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18 AC 27 0.0482143 0.0625000 0.7714286
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19 AG 26 0.0464286 0.0625000 0.7428571
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20 AT 41 0.0732143 0.0625000 1.1714286
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21 CA 26 0.0464286 0.0625000 0.7428571
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22 CC 24 0.0428571 0.0625000 0.6857143
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23 CG 15 0.0267857 0.0625000 0.4285714
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24 CT 41 0.0732143 0.0625000 1.1714286
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25 GA 19 0.0339286 0.0625000 0.5428571
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26 GC 17 0.0303571 0.0625000 0.4857143
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27 GG 19 0.0339286 0.0625000 0.5428571
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28 GT 43 0.0767857 0.0625000 1.2285714
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29 TA 50 0.0892857 0.0625000 1.4285714
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30 TC 38 0.0678571 0.0625000 1.0857143
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31 TG 37 0.0660714 0.0625000 1.0571429
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32 TT 97 0.1732143 0.0625000 2.7714286
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34 Other 0 0.0000000 0.0000000 10000000000.0000000