Mercurial > repos > devteam > data_manager_twobit_builder
comparison data_manager/twobit_builder.xml @ 0:26e3ae5f74ed draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_twobit_builder commit 4ec9eb1570ea116d83f5464a786af6e14fb5b57d
| author | devteam |
|---|---|
| date | Fri, 02 Oct 2015 17:32:37 -0400 |
| parents | |
| children | 298d15849a14 |
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| -1:000000000000 | 0:26e3ae5f74ed |
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| 1 <tool id="twobit_builder_data_manager" name="TwoBit" tool_type="manage_data" version="0.0.1"> | |
| 2 <requirements> | |
| 3 <requirement type="package" version="312">ucsc_tools</requirement> | |
| 4 </requirements> | |
| 5 <description>builder</description> | |
| 6 <command interpreter="python">twobit_builder.py "${out_file}" --fasta_filename "${all_fasta_source.fields.path}" --fasta_dbkey "${all_fasta_source.fields.dbkey}" --fasta_description "${all_fasta_source.fields.name}"</command> | |
| 7 <inputs> | |
| 8 <param name="all_fasta_source" type="select" label="Source FASTA Sequence"> | |
| 9 <options from_data_table="all_fasta"/> | |
| 10 </param> | |
| 11 <param type="text" name="sequence_name" value="" label="Name of sequence" /> | |
| 12 <param type="text" name="sequence_id" value="" label="ID for sequence" /> | |
| 13 | |
| 14 </inputs> | |
| 15 <outputs> | |
| 16 <data name="out_file" format="data_manager_json"/> | |
| 17 </outputs> | |
| 18 | |
| 19 <tests> | |
| 20 <test> | |
| 21 <param name="all_fasta_source" value="sacCer2"/> | |
| 22 <param name="sequence_name" value=""/> | |
| 23 <output name="sequence_id" file="data_manager_two_bit_out_1.dat"/> | |
| 24 </test> | |
| 25 </tests> | |
| 26 | |
| 27 <help> | |
| 28 | |
| 29 .. class:: infomark | |
| 30 | |
| 31 **Notice:** If you leave name, description, or id blank, it will be generated automatically. | |
| 32 | |
| 33 </help> | |
| 34 </tool> | |
| 35 |