Mercurial > repos > devteam > data_manager_rsync_g2

comparison data_manager/data_manager_rsync.xml @ 1:861c071a6cd5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_rsync_g2 commit 8652f36a3a3838dca989426961561e81432acf4f
author iuc
date Tue, 04 Apr 2017 17:53:15 -0400
parents 70afa70bba41
children cf2f615e2515
comparison
equal deleted inserted replaced
0:70afa70bba41 1:861c071a6cd5
1 <tool id="data_manager_rsync_g2" name="Rsync with g2" version="0.0.1" tool_type="manage_data"> 1 <tool id="data_manager_rsync_g2" name="Rsync with g2" version="0.0.1" tool_type="manage_data">
2 <options sanitize="False" /> 2 <options sanitize="False" />
3 <description>fetching</description> 3 <description>fetching</description>
4 <command interpreter="python">data_manager_rsync.py "${out_file}"</command> 4 <command detect_errors="exit_code"><![CDATA[
5 <stdio> 5 python '$__tool_directory__/data_manager_rsync.py'
6 <exit_code range="1:" err_level="fatal" /> 6 '${out_file}'
7 <exit_code range=":-1" err_level="fatal" /> 7 ]]></command>
8 </stdio>
9 <inputs> 8 <inputs>
10
11 <param name="dbkey" type="genomebuild" label="dbkey to search for Reference Data" help="Specify ? to show all"/> 9 <param name="dbkey" type="genomebuild" label="dbkey to search for Reference Data" help="Specify ? to show all"/>
12 10
13 <param name="data_table_names" type="select" display="checkboxes" multiple="True" optional="True" 11 <param name="data_table_names" type="select" display="checkboxes" multiple="True" optional="True" refresh_on_change="dbkey"
14 label="Choose Desired Data Tables" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )" 12 label="Choose Desired Data Tables" dynamic_options="galaxy_code_get_available_data_tables( __trans__ )" />
15 refresh_on_change="dbkey"/> 13
16 14 <param name="data_table_entries" type="select" display="checkboxes" multiple="true" optional="false" refresh_on_change="dbkey"
17 15 label="Choose Desired Data Tables Entries" dynamic_options="galaxy_code_get_available_data_tables_entries( __trans__, dbkey, data_table_names )" />
18 <param name="data_table_entries" type="select" display="checkboxes" multiple="True" optional="False"
19 label="Choose Desired Data Tables Entries" dynamic_options="galaxy_code_get_available_data_tables_entries( __trans__, dbkey, data_table_names )"
20 refresh_on_change="dbkey"/>
21 </inputs> 16 </inputs>
22 <outputs> 17 <outputs>
23 <data name="out_file" format="data_manager_json" dbkey="dbkey"/> 18 <data name="out_file" format="data_manager_json" dbkey="dbkey"/>
24 </outputs> 19 </outputs>
25 <tests> 20 <tests>
35 30
36 This tool connects to the Galaxy Project's rsync reference data repository to download data and populate tool data tables. 31 This tool connects to the Galaxy Project's rsync reference data repository to download data and populate tool data tables.
37 32
38 ------ 33 ------
39 34
40
41
42 .. class:: infomark 35 .. class:: infomark
43 36
44 **Notice:** If you do not have a particular data table defined, then it will be created and persisted dynamically. 37 **Notice:** If you do not have a particular data table defined, then it will be created and persisted dynamically.
45
46 </help> 38 </help>
47 <code file="data_manager_rsync.py" /> 39 <code file="data_manager_rsync.py" />
48 </tool> 40 </tool>