# HG changeset patch
# User iuc
# Date 1606048935 0
# Node ID 2895cb06870636c4d82a9d1148ab63f12cd347a2
# Parent  7ba12e5d28e1434e209faa051972611303edd265
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem_index_builder commit 02d2967f77e3fa5a18aea63dc84aa9ab418dc165"

diff -r 7ba12e5d28e1 -r 2895cb068706 data_manager/bwa_mem_index_builder.py
--- a/data_manager/bwa_mem_index_builder.py	Wed Dec 04 21:28:41 2019 +0000
+++ b/data_manager/bwa_mem_index_builder.py	Sun Nov 22 12:42:15 2020 +0000
@@ -2,11 +2,11 @@
 # Dan Blankenberg
 from __future__ import print_function
 
+import json
 import optparse
 import os
 import subprocess
 import sys
-from json import dumps, loads
 
 CHUNK_SIZE = 2**20
 TWO_GB = 2**30 * 2
@@ -68,7 +68,8 @@
 
     filename = args[0]
 
-    params = loads(open(filename).read())
+    with open(filename) as fh:
+        params = json.load(fh)
     target_directory = params['output_data'][0]['extra_files_path']
     os.mkdir(target_directory)
     data_manager_dict = {}
@@ -93,7 +94,8 @@
     )
 
     # save info to json file
-    open(filename, 'w').write(dumps(data_manager_dict, sort_keys=True))
+    with open(filename, 'w') as fh:
+        json.dump(data_manager_dict, fh, sort_keys=True)
 
 
 if __name__ == "__main__":