Mercurial > repos > devteam > data_manager_bwa_mem_index_builder

comparison data_manager_conf.xml @ 0:bed5e31494e4 draft

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author devteam
date Wed, 18 Mar 2015 14:49:35 -0400
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children 5366dd411571
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1 <?xml version="1.0"?>
2 <data_managers>
3
4 <data_manager tool_file="data_manager/bwa_mem_index_builder.xml" id="bwa_mem_index_builder" version="0.0.1">
5 <data_table name="bwa_mem_indexes">
6 <output>
7 <column name="value" />
8 <column name="dbkey" />
9 <column name="name" />
10 <column name="path" output_ref="out_file" >
11 <move type="directory" relativize_symlinks="True">
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_mem_index/${value}</target>
14 </move>
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_mem_index/${value}/${path}</value_translation>
16 <value_translation type="function">abspath</value_translation>
17 </column>
18 </output>
19 </data_table>
20 </data_manager
21
22 </data_managers>