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annotate data_manager_conf.xml @ 10:74dbe9e6c888 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
author iuc
date Thu, 05 Dec 2024 06:47:18 +0000
parents 0429479e3821
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1 <?xml version="1.0"?>
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2 <data_managers>
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0429479e3821 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem_index_builder commit 096286097ed5cdf189a1b68c3fc34d10f4142e54
iuc
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3 <data_manager tool_file="data_manager/bwa_mem_index_builder.xml" id="bwa_mem_index_builder">
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4 <data_table name="bwa_mem_indexes">
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5 <output>
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6 <column name="value" />
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7 <column name="dbkey" />
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8 <column name="name" />
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9 <column name="path" output_ref="out_file" >
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10 <move type="directory" relativize_symlinks="True">
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11 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
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74dbe9e6c888 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
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12 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">genomes/${dbkey}/bwa_mem_index/v1/${value}</target>
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13 </move>
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74dbe9e6c888 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_bwa_mem_index_builder commit 57d05675396f0b44265fb4dbc8f9f891c6073219
iuc
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14 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/genomes/${dbkey}/bwa_mem_index/v1/${value}/${path}</value_translation>
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15 <value_translation type="function">abspath</value_translation>
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16 </column>
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17 </output>
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18 </data_table>
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19 </data_manager>
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20 </data_managers>