Mercurial > repos > devteam > data_manager_bwa_index_builder

comparison data_manager_conf.xml @ 0:ae10d0ddbbb1 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_bwa_index_builder commit 86cf90107482cab1cb47fc0d42d6705f8077daa7
author devteam
date Fri, 06 Nov 2015 14:15:00 -0500
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-1:000000000000 0:ae10d0ddbbb1
1 <?xml version="1.0"?>
2 <data_managers>
3
4 <data_manager tool_file="data_manager/bwa_index_builder.xml" id="bwa_index_builder" version="0.0.1">
5 <data_table name="bwa_indexes">
6 <output>
7 <column name="value" />
8 <column name="dbkey" />
9 <column name="name" />
10 <column name="path" output_ref="out_file" >
11 <move type="directory" relativize_symlinks="True">
12 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
13 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_index/${value}</target>
14 </move>
15 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_index/${value}/${path}</value_translation>
16 <value_translation type="function">abspath</value_translation>
17 </column>
18 </output>
19 </data_table>
20 </data_manager>
21
22 <data_manager tool_file="data_manager/bwa_color_space_index_builder.xml" id="bwa_color_space_index_builder" version="0.0.1">
23 <data_table name="bwa_indexes_color">
24 <output>
25 <column name="value" />
26 <column name="dbkey" />
27 <column name="name" />
28 <column name="path" output_ref="out_file" >
29 <move type="directory" relativize_symlinks="True">
30 <!-- <source>${path}</source>--> <!-- out_file.extra_files_path is used as base by default --> <!-- if no source, eg for type=directory, then refers to base -->
31 <target base="${GALAXY_DATA_MANAGER_DATA_PATH}">${dbkey}/bwa_index/${value}/color</target> <!-- confirm this as preferred location -->
32 </move>
33 <value_translation>${GALAXY_DATA_MANAGER_DATA_PATH}/${dbkey}/bwa_index/${value}/color/${path}</value_translation>
34 <value_translation type="function">abspath</value_translation>
35 </column>
36 </output>
37 </data_table>
38 </data_manager>
39
40 </data_managers>