Mercurial > repos > devteam > cummerbund
comparison cummeRbund_options.py @ 0:e462121e8269 draft
planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/cummerbund commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
| author | devteam |
|---|---|
| date | Mon, 09 Nov 2015 11:27:38 -0500 |
| parents | |
| children | 4bbfacecedd3 |
comparison
equal
deleted
inserted
replaced
| -1:000000000000 | 0:e462121e8269 |
|---|---|
| 1 import sqlite3 | |
| 2 | |
| 3 def get_genes( database_path ): | |
| 4 conn = sqlite3.connect( database_path ) | |
| 5 gene_ids = conn.execute( 'SELECT gene_short_name, gene_id FROM genes ORDER BY gene_short_name' ) | |
| 6 return [ ( gene_id[ 0 ], gene_id[ 1 ], False ) for gene_id in gene_ids ] | |
| 7 | |
| 8 def get_samples( database_path ): | |
| 9 conn = sqlite3.connect( database_path ) | |
| 10 samples = conn.execute( 'SELECT sample_name FROM samples ORDER BY sample_name' ) | |
| 11 return [ ( sample[ 0 ], sample[ 0 ], False ) for sample in samples ] |