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comparison cummeRbund_macros.xml @ 1:aefbcaf15a94 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/cummerbund commit f3f0bef4a450aafab3c6b05a27647471f93b22f3
author devteam
date Thu, 23 Feb 2017 20:23:50 -0500
parents e462121e8269
children 4bbfacecedd3
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0:e462121e8269 1:aefbcaf15a94
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <macro name="stdio">
4 <stdio>
5 <exit_code range="1:" />
6 <exit_code range=":-1" />
7 <regex match="Error:" />
8 <regex match="Exception:" />
9 </stdio>
10 </macro>
11 <macro name="replicates_checkbox"> 3 <macro name="replicates_checkbox">
12 <param name="replicates" type="boolean" truevalue="--replicates" falsevalue="" checked="True" label="Replicates?"/> 4 <param name="replicates" type="boolean" truevalue="--replicates" falsevalue="" checked="True" label="Replicates?"/>
13 </macro> 5 </macro>
14 <macro name="log10_checkbox"> 6 <macro name="log10_checkbox">
15 <param name="log10" type="boolean" truevalue="--log10" falsevalue="" checked="True" label="Apply log10 transformation on FPKM values?"/> 7 <param name="log10" type="boolean" truevalue="--log10" falsevalue="" checked="True" label="Apply log10 transformation on FPKM values?"/>
17 <macro name="xy_selector"> 9 <macro name="xy_selector">
18 <param name="x" type="select" label="Sample name for x axis" dynamic_options="get_samples(input_database.dataset.file_name)" /> 10 <param name="x" type="select" label="Sample name for x axis" dynamic_options="get_samples(input_database.dataset.file_name)" />
19 <param name="y" type="select" label="Sample name for y axis" dynamic_options="get_samples(input_database.dataset.file_name)" /> 11 <param name="y" type="select" label="Sample name for y axis" dynamic_options="get_samples(input_database.dataset.file_name)" />
20 </macro> 12 </macro>
21 <macro name="genes_selector"> 13 <macro name="genes_selector">
22 <repeat name="genes" title="Genes"> 14 <repeat name="genes" title="Genes" min="2">
15 <!-- Cannot create a heatmap for less than two genes -->
23 <param name="gene_id" type="select" label="Gene ID" dynamic_options="get_genes(input_database.dataset.file_name)" /> 16 <param name="gene_id" type="select" label="Gene ID" dynamic_options="get_genes(input_database.dataset.file_name)" />
24 </repeat> 17 </repeat>
25 </macro> 18 </macro>
26 <macro name="features_selector"> 19 <macro name="features_selector">
27 <param name="features" type="select" label="Expression levels to plot?"> 20 <param name="features" type="select" label="Expression levels to plot?">