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comparison cuffnorm_wrapper.xml @ 3:47dccbe0516c draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffnorm commit 82ee6fc860c52c531b7a57bbb346ab1a67a434a5
author devteam
date Sun, 19 Feb 2017 12:08:50 -0500
parents 885314f0d369
children dc97f71022e5
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2:885314f0d369 3:47dccbe0516c
1 <tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.1"> 1 <tool id="cuffnorm" name="Cuffnorm" version="@VERSION@.2">
2 <description>Create normalized expression levels</description> 2 <description>Create normalized expression levels</description>
3 <macros> 3 <macros>
4 <import>cuff_macros.xml</import> 4 <import>cuff_macros.xml</import>
5 </macros> 5 </macros>
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <expand macro="stdio" />
8 <version_command>cuffnorm 2>&amp;1 | head -n 1</version_command> 7 <version_command>cuffnorm 2>&amp;1 | head -n 1</version_command>
9 <command> 8 <command detect_errors="aggressive">
10 cuffnorm 9 cuffnorm
11 --no-update-check 10 --no-update-check
12 --num-threads="\${GALAXY_SLOTS:-4}" 11 --num-threads="\${GALAXY_SLOTS:-4}"
13 --library-norm-method=$library_norm_method 12 --library-norm-method=$library_norm_method
14 --output-format=$output_format 13 --output-format=$output_format