Mercurial > repos > devteam > cuffmerge

diff cuffmerge_wrapper.xml @ 5:8cedf303be28 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffmerge commit 92be38a0f40ef6d6ccb55999f3eb8bf960e376c8"
author iuc
date Fri, 20 Aug 2021 16:39:54 +0000
parents 7a9ca385b471
children f4bc1b2fc4d4
line wrap: on
line diff
--- a/cuffmerge_wrapper.xml	Tue Jun 16 16:58:15 2020 +0000
+++ b/cuffmerge_wrapper.xml	Fri Aug 20 16:39:54 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="cuffmerge" name="Cuffmerge" version="@VERSION@.2">
+<tool id="cuffmerge" name="Cuffmerge" version="@VERSION@.3">
     <description>merge together several Cufflinks assemblies</description>
     <macros>
       <import>cuff_macros.xml</import>
@@ -20,9 +20,9 @@
             #if $seq_data.use_seq_data == "Yes":
                 -s
                 #if $seq_data.seq_source.index_source == "history":
-                    --ref_file '${seq_data.seq_source.ref_file}'
+                    '${seq_data.seq_source.ref_file}'
                 #else:
-                    --index '${seq_data.seq_source.index.fields.path}'
+                    '${seq_data.seq_source.index.fields.path}'
                 #end if
             #end if