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comparison cuffdiff_wrapper.xml @ 2:c139f0dd4ee6 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tool_collections/cufflinks/cuffdiff commit 6e148b31fed1b322ce720804d8525088ec6d43f9
author devteam
date Thu, 29 Oct 2015 22:33:47 -0400
parents 9ba750f285e3
children 9ec1cc10742c
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1:9ba750f285e3 2:c139f0dd4ee6
11 </macros> 11 </macros>
12 <version_command>cuffdiff 2>&amp;1 | head -n 1</version_command> 12 <version_command>cuffdiff 2>&amp;1 | head -n 1</version_command>
13 <command><![CDATA[ 13 <command><![CDATA[
14 cuffdiff 14 cuffdiff
15 --no-update-check 15 --no-update-check
16 --quiet
16 --FDR=$fdr 17 --FDR=$fdr
17 --num-threads="\${GALAXY_SLOTS:-4}" 18 --num-threads="\${GALAXY_SLOTS:-4}"
18 --min-alignment-count=$min_alignment_count 19 --min-alignment-count=$min_alignment_count
19 --library-norm-method=$library_norm_method 20 --library-norm-method=$library_norm_method
20 --dispersion-method=$dispersion_method 21 --dispersion-method=$dispersion_method