Mercurial > repos > devteam > cuffdiff

comparison cuffdiff_wrapper.xml @ 7:456797205473 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffdiff commit 0e1d7660ab8ccb677b4f79207f5bc78097640f04"
author iuc
date Sat, 27 Nov 2021 09:56:54 +0000
parents 986b6cbd0f59
children a10919766c11
comparison
equal deleted inserted replaced
6:986b6cbd0f59 7:456797205473
281 </repeat> 281 </repeat>
282 </conditional> 282 </conditional>
283 <param name="fdr" value="0.05" /> 283 <param name="fdr" value="0.05" />
284 <param name="min_alignment_count" value="0" /> 284 <param name="min_alignment_count" value="0" />
285 <param name="do_bias_correction" value="No" /> 285 <param name="do_bias_correction" value="No" />
286 <param name="do_normalization" value="No" />
287 <param name="multiread_correct" value="No"/> 286 <param name="multiread_correct" value="No"/>
288 <param name="sAdditional" value="No"/> 287 <param name="sAdditional" value="No"/>
289 <output name="output_cummerbund" ftype="sqlite" file="cuffdiff_out.sqlite" compare="sim_size" /> 288 <output name="output_cummerbund" ftype="sqlite" file="cuffdiff_out.sqlite" compare="sim_size" />
290 </test> 289 </test>
291 <test> 290 <test>
306 </param> 305 </param>
307 </conditional> 306 </conditional>
308 <param name="fdr" value="0.05" /> 307 <param name="fdr" value="0.05" />
309 <param name="min_alignment_count" value="0" /> 308 <param name="min_alignment_count" value="0" />
310 <param name="do_bias_correction" value="No" /> 309 <param name="do_bias_correction" value="No" />
311 <param name="do_normalization" value="No" />
312 <param name="multiread_correct" value="No"/> 310 <param name="multiread_correct" value="No"/>
313 <param name="sAdditional" value="No"/> 311 <param name="sAdditional" value="No"/>
314 <output name="output_cummerbund" ftype="sqlite" file="cuffdiff_out.sqlite" compare="sim_size" /> 312 <output name="output_cummerbund" ftype="sqlite" file="cuffdiff_out.sqlite" compare="sim_size" />
315 </test> 313 </test>
316 <test> 314 <test>
331 </repeat> 329 </repeat>
332 </conditional> 330 </conditional>
333 <param name="fdr" value="0.05" /> 331 <param name="fdr" value="0.05" />
334 <param name="min_alignment_count" value="0" /> 332 <param name="min_alignment_count" value="0" />
335 <param name="do_bias_correction" value="No" /> 333 <param name="do_bias_correction" value="No" />
336 <param name="do_normalization" value="No" />
337 <param name="multiread_correct" value="No"/> 334 <param name="multiread_correct" value="No"/>
338 <param name="sAdditional" value="No"/> 335 <param name="sAdditional" value="No"/>
339 <output name="splicing_diff" file="splicing.diff"/> 336 <output name="splicing_diff" file="splicing.diff"/>
340 <output name="promoters_diff" file="promoters.diff"/> 337 <output name="promoters_diff" file="promoters.diff"/>
341 <output name="cds_diff" file="cds.diff"/> 338 <output name="cds_diff" file="cds.diff"/>