Mercurial > repos > devteam > cuffcompare

comparison test-data/output.stats @ 4:806c27c97df7 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/cufflinks/cuffcompare commit a0b0845a9d1b3e7ecdeacd1e606133617e3918bd"
author iuc
date Tue, 16 Jun 2020 16:56:55 +0000
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3:5aac9b9d6f2a 4:806c27c97df7
1 # Cuffcompare v2.2.1 | Command line was:
2 #cuffcompare -o output -r cuffcompare_in3.gtf -R -e 100 -d 100 cuffcompare_in1.gtf cuffcompare_in2.gtf
3 #
4
5 #= Summary for dataset: cuffcompare_in1.gtf :
6 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
7 # (0 multi-transcript loci, ~1.0 transcripts per locus)
8 # Reference mRNAs : 1 in 1 loci (1 multi-exon)
9 # Super-loci w/ reference transcripts: 1
10 #--------------------| Sn | Sp | fSn | fSp
11 Base level: 2.2 2.3 - -
12 Exon level: 0.0 0.0 0.0 0.0
13 Intron level: 0.0 -nan 0.0 -nan
14 Intron chain level: 0.0 -nan 0.0 -nan
15 Transcript level: 0.0 0.0 0.0 0.0
16 Locus level: 0.0 0.0 0.0 0.0
17
18 Matching intron chains: 0
19 Matching loci: 0
20
21 Missed exons: 2/3 ( 66.7%)
22 Novel exons: 49/50 ( 98.0%)
23 Missed introns: 2/2 (100.0%)
24 Missed loci: 0/1 ( 0.0%)
25 Novel loci: 49/50 ( 98.0%)
26
27 #= Summary for dataset: cuffcompare_in2.gtf :
28 # Query mRNAs : 50 in 50 loci (0 multi-exon transcripts)
29 # (0 multi-transcript loci, ~1.0 transcripts per locus)
30 # Reference mRNAs : 0 in 0 loci (0 multi-exon)
31
32 Total union super-loci across all input datasets: 87
33 (0 multi-transcript, ~1.1 transcripts per locus)