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comparison rgClustalw.xml @ 1:ce785326df6e draft

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planemo upload commit 33927a87ba2eee9bf0ecdd376a66241b17b3d734
author devteam
date Tue, 13 Oct 2015 12:14:40 -0400
parents de3662385a52
children bed27b5c0f63
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0:de3662385a52 1:ce785326df6e
22 #end if 22 #end if
23 </command> 23 </command>
24 <inputs> 24 <inputs>
25 <page> 25 <page>
26 <param format="fasta" name="input" type="data" label="Fasta File" /> 26 <param format="fasta" name="input" type="data" label="Fasta File" />
27 <param name="outname" label="Name for output files to make it easy to remember what you did" type="text" size="50" value="Clustal_run" /> 27 <param name="outname" label="Name for output files to make it easy to remember what you did" type="text" value="Clustal_run" />
28 <param name="dnarna" type="select" label="Data Type"> 28 <param name="dnarna" type="select" label="Data Type">
29 <option value="DNA" selected="True">DNA nucleotide sequences</option> 29 <option value="DNA" selected="True">DNA nucleotide sequences</option>
30 <option value="PROTEIN">Protein sequences</option> 30 <option value="PROTEIN">Protein sequences</option>
31 </param> 31 </param>
32 <conditional name="outcontrol"> 32 <conditional name="outcontrol">
55 <option value="part">only part of the alignment</option> 55 <option value="part">only part of the alignment</option>
56 </param> 56 </param>
57 <when value="complete"> 57 <when value="complete">
58 </when> 58 </when>
59 <when value="part"> 59 <when value="part">
60 <param name="seq_range_start" size="5" type="integer" value="1" label="start point" help="sequence range to write"> 60 <param name="seq_range_start" type="integer" value="1" label="start point" help="sequence range to write">
61 </param> 61 </param>
62 <param name="seq_range_end" size="5" type="integer" value="99999" label="end point" > 62 <param name="seq_range_end" type="integer" value="99999" label="end point" >
63 </param> 63 </param>
64 </when> 64 </when>
65 </conditional> 65 </conditional>
66 </page> 66 </page>
67 </inputs> 67 </inputs>
123 123
124 .. _Clustfirst: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003732.html 124 .. _Clustfirst: http://lists.bx.psu.edu/pipermail/galaxy-dev/2010-November/003732.html
125 125
126 .. _LGPL: http://www.gnu.org/copyleft/lesser.html 126 .. _LGPL: http://www.gnu.org/copyleft/lesser.html
127 127
128 </help> 128 </help>
129 129 <citations>
130 <citation type="doi">10.1093/bioinformatics/btm404</citation>
131 </citations>
130 </tool> 132 </tool>
131 133