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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/change_case commit 5a4e0ca9992af3a6e5ed2b533f04bb82ce761e0b
author devteam
date Mon, 09 Nov 2015 11:22:13 -0500
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1 <tool id="ChangeCase" name="Change Case" version="1.0.0">
2 <description> of selected columns</description>
3 <stdio>
4 <exit_code range="1:" err_level="fatal" />
5 </stdio>
6 <command interpreter="perl">changeCase.pl "${input}" "${cols}" "${delimiter}" "${casing}" "${out_file1}"</command>
7 <inputs>
8 <param name="input" format="txt" type="data" label="From"/>
9 <param name="cols" type="text" value="c1,c2" label="Change case of columns"/>
10 <param name="delimiter" type="select" label="Delimited by">
11 <option value="TAB">Tab</option>
12 <option value="SPACE">Whitespace</option>
13 <option value="DOT">Dot</option>
14 <option value="COMMA">Comma</option>
15 <option value="DASH">Dash</option>
16 <option value="UNDERSCORE">Underscore</option>
17 <option value="PIPE">Pipe</option>
18 </param>
19 <param name="casing" type="select" label="To">
20 <option value="up">Upper case</option>
21 <option value="lo">Lower case</option>
22 </param>
23 </inputs>
24 <outputs>
25 <data format="tabular" name="out_file1" />
26 </outputs>
27 <tests>
28 <test>
29 <param name="input" value="1.txt" ftype="txt"/>
30 <param name="cols" value="c1"/>
31 <param name="delimiter" value="SPACE"/>
32 <param name="casing" value="up"/>
33 <output name="out_file1" file="changeCase_out1.tabular"/>
34 </test>
35 <test>
36 <param name="input" value="1.bed" ftype="bed"/>
37 <param name="cols" value="c1"/>
38 <param name="delimiter" value="TAB"/>
39 <param name="casing" value="up"/>
40 <output name="out_file1" file="changeCase_out2.tabular"/>
41 </test>
42 </tests>
43 <help>
44
45 .. class:: warningmark
46
47 **This tool breaks column assignments.** To re-establish column assignments run the tool and click on the pencil icon in the resulting history item.
48
49 .. class:: warningmark
50
51 The format of the resulting dataset from this tool is always tabular.
52
53 -----
54
55 **What it does**
56
57 This tool selects specified columns from a dataset and converts the values of those columns to upper or lower case.
58
59 - Columns are specified as **c1**, **c2**, and so on.
60 - Columns can be specified in any order (e.g., **c2,c1,c6**)
61
62 -----
63
64 **Example**
65
66 Changing columns 1 and 3 ( delimited by Comma ) to upper case in::
67
68 apple,is,good
69 windows,is,bad
70
71 will result in::
72
73 APPLE is GOOD
74 WINDOWS is BAD
75
76 </help>
77 </tool>