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view tool_dependencies.xml @ 0:95d5133dd241 draft

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author devteam
date Mon, 17 Sep 2012 14:19:45 -0400
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children d24d774f2b08
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<?xml version="1.0"?>
<tool_dependency>
    <package name="bwa" version="0.6.2">
        <install version="1.0">
            <actions>
                <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.6.2.tar.bz2</action>
                <action type="shell_command">make</action>
                <action type="move_file">
                    <source>bwa</source>
                    <destination>$INSTALL_DIR/bin</destination>
                </action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Compiling BWA requires zlib and libpthread to be present on your system.
        </readme>
    </package>
</tool_dependency>