Mercurial > repos > devteam > bwa_mappers

comparison tool_dependencies.xml @ 2:3365c42b076d draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded updated tool dependency definition.
author devteam
date Tue, 17 Dec 2013 09:11:26 -0500
parents d24d774f2b08
children
comparison
equal deleted inserted replaced
1:d24d774f2b08 2:3365c42b076d
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="bwa" version="0.5.9"> 3 <package name="bwa" version="0.5.9">
4 <install version="1.0"> 4 <repository changeset_revision="1e8ba0ebe119" name="package_bwa_0_5_9" owner="devteam" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 <actions>
6 <action type="download_by_url">http://downloads.sourceforge.net/project/bio-bwa/bwa-0.5.9.tar.bz2</action>
7 <action type="shell_command">make</action>
8 <action type="move_file">
9 <source>bwa</source>
10 <destination>$INSTALL_DIR/bin</destination>
11 </action>
12 <action type="set_environment">
13 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
14 </action>
15 </actions>
16 </install>
17 <readme>
18 Compiling BWA requires zlib and libpthread to be present on your system.
19 </readme>
20 </package> 5 </package>
21 </tool_dependency> 6 </tool_dependency>
22