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comparison bwa.xml @ 16:47c6967dc4e0 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit 8f4d108191d52e3b60212dfcc3f57541e5f849d0
author iuc
date Fri, 19 Aug 2022 18:51:11 +0000
parents 22b497739c9c
children 23e88ff6c494
comparison
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15:22b497739c9c 16:47c6967dc4e0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="bwa" name="Map with BWA" version="@VERSION@.4"> 2 <tool id="bwa" name="Map with BWA" version="@VERSION@.5">
3 <description>- map short reads (&lt; 100 bp) against reference genome</description> 3 <description>- map short reads (&lt; 100 bp) against reference genome</description>
4 <xrefs> 4 <xrefs>
5 <xref type="bio.tools">bwa</xref> 5 <xref type="bio.tools">bwa</xref>
6 </xrefs> 6 </xrefs>
7 <macros> 7 <macros>
127 #if str( $input_type.adv_pe_options.adv_pe_options_selector) == "True": 127 #if str( $input_type.adv_pe_options.adv_pe_options_selector) == "True":
128 -a ${$input_type.adv_pe_options.a} 128 -a ${$input_type.adv_pe_options.a}
129 -o ${$input_type.adv_pe_options.o} 129 -o ${$input_type.adv_pe_options.o}
130 -n ${$input_type.adv_pe_options.n} 130 -n ${$input_type.adv_pe_options.n}
131 -N ${$input_type.adv_pe_options.N} 131 -N ${$input_type.adv_pe_options.N}
132 -c ${$input_type.adv_pe_options.c}
132 #end if 133 #end if
133 @read_group_options@ 134 @read_group_options@
134 #if str( $input_type.input_type_selector ) == "paired_collection": 135 #if str( $input_type.input_type_selector ) == "paired_collection":
135 '${reference_fasta_filename}' first.sai second.sai '${input_type.fastq_input1.forward}' '${input_type.fastq_input1.reverse}' 136 '${reference_fasta_filename}' first.sai second.sai '${input_type.fastq_input1.forward}' '${input_type.fastq_input1.reverse}'
136 #else: 137 #else: