Mercurial > repos > devteam > bwa

comparison bwa-mem.xml @ 12:086ba7b646e5 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/bwa commit e2a10eeee8765ba6cf03847562e56cdaeaf4ba5c"
author iuc
date Thu, 05 Sep 2019 19:35:56 -0400
parents 6def3ba376a7
children 8a98cfb7ea55
comparison
equal deleted inserted replaced
11:6def3ba376a7 12:086ba7b646e5
104 #else: 104 #else:
105 '${reference_fasta_filename}' 105 '${reference_fasta_filename}'
106 '${fastq_input.fastq_input1}' 106 '${fastq_input.fastq_input1}'
107 #end if 107 #end if
108 108
109 | samtools sort -@\${GALAXY_SLOTS:-2} -O bam -o '$bam_output' 109 | samtools sort -@\${GALAXY_SLOTS:-2} -T "\${TMPDIR:-.}" -O bam -o '$bam_output'
110 ]]></command> 110 ]]></command>
111 111
112 <inputs> 112 <inputs>
113 <expand macro="reference_source_conditional" /> 113 <expand macro="reference_source_conditional" />
114 <conditional name="fastq_input"> 114 <conditional name="fastq_input">