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comparison bowtie_wrapper.py @ 2:ba29251df197 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie_wrappers commit b2e1043bf4db38be490fec298a1829f8e4a1c48e
author devteam
date Thu, 18 Aug 2016 10:19:58 -0400
parents 867a8c8e870e
children bdd9fcdb398e
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1:867a8c8e870e 2:ba29251df197
1 #!/usr/bin/env python 1 #!/usr/bin/env python
2 2
3 """ 3 """
4 Runs Bowtie on single-end or paired-end data. 4 Runs Bowtie on single-end or paired-end data.
5 For use with Bowtie v. 0.12.7
6 5
7 usage: bowtie_wrapper.py [options] 6 usage: bowtie_wrapper.py [options]
8 -t, --threads=t: The number of threads to run 7 -t, --threads=t: The number of threads to run
9 -o, --output=o: The output file 8 -o, --output=o: The output file
10 --output_unmapped_reads=: File name for unmapped reads (single-end) 9 --output_unmapped_reads=: File name for unmapped reads (single-end)