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comparison bowtie_wrapper.xml @ 3:9326d6e6882a draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie_wrappers commit a326a3469adfd33babe792cf58544438582a56a1
author devteam
date Sun, 08 Jan 2017 08:00:56 -0500
parents ba29251df197
children bdd9fcdb398e
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2:ba29251df197 3:9326d6e6882a
1 <tool id="bowtie_wrapper" name="Map with Bowtie for Illumina" version="1.1.5"> 1 <tool id="bowtie_wrapper" name="Map with Bowtie for Illumina" version="1.2.0">
2 <requirements> 2 <requirements>
3 <requirement type="package" version="1.1.2">bowtie</requirement> 3 <requirement type="package" version="1.2.0">bowtie</requirement>
4 </requirements> 4 </requirements>
5 <description></description> 5 <description></description>
6 <version_command>bowtie --version</version_command> 6 <version_command>bowtie --version</version_command>
7 <command interpreter="python"> 7 <command>
8 bowtie_wrapper.py 8 python '$__tool_directory__/bowtie_wrapper.py'
9 ## Set number of threads 9 ## Set number of threads
10 --threads="\${GALAXY_SLOTS:-4}" 10 --threads="\${GALAXY_SLOTS:-4}"
11 ## Outputs 11 ## Outputs
12 --output="${output}" 12 --output="${output}"
13 #if str( $singlePaired.sPaired ) == "single" 13 #if str( $singlePaired.sPaired ) == "single"