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comparison bowtie2_wrapper.xml @ 8:aef49b7f08b2 draft

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planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/tools/bowtie2 commit 637e614b544bf3cd75306f27bcfe537cacae4a58
author devteam
date Mon, 16 Nov 2015 14:37:53 -0500
parents 76231961d33b
children fed480fea9f0
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7:51851252d90f 8:aef49b7f08b2
1 <tool id="bowtie2" name="Bowtie2" version="0.6"> 1 <tool id="bowtie2" name="Bowtie2" version="2.2.6">
2 <!-- Wrapper compatible with Bowtie version 2.2.4 -->
3 <description>- map reads against reference genome</description> 2 <description>- map reads against reference genome</description>
4 <macros> 3 <macros>
5 <import>read_group_macros.xml</import> 4 <import>read_group_macros.xml</import>
6 </macros> 5 </macros>
7 <version_command>bowtie2 --version</version_command> 6 <version_command>bowtie2 --version</version_command>
8 <requirements> 7 <requirements>
9 <requirement type="package" version="2.2.4">bowtie2</requirement> 8 <requirement type="package" version="2.2.6">bowtie2</requirement>
10 <requirement type="package" version="0.1.18">samtools</requirement> 9 <requirement type="package" version="1.2">samtools</requirement>
11 </requirements> 10 </requirements>
12 <command> 11 <command>
13 12
14 ## prepare bowtie2 index 13 ## prepare bowtie2 index
15 #set index_path = '' 14 #set index_path = ''