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comparison datatypes_conf.txt @ 1:10dce68b584b

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Uploaded with readme file (no code changes). Calling this v0.0.11 to match the BLAST+ wrappers.
author peterjc
date Thu, 23 Aug 2012 09:33:16 -0400
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0:e1c29f302301 1:10dce68b584b
1 Galaxy datatypes for NCBI BLAST+ suite
2 ======================================
3
4 These Galaxy datatypes are copyright 2010-2012 by Peter Cock, The James Hutton
5 Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
6 See the licence text below.
7
8 Note that these files (and the associated BLAST+ wrappers) were originally
9 distributed as part of the main Galaxy repository, but as of August 2012 moved
10 to the Galaxy Tool Shed as 'blast_datatypes' (and 'ncbi_blast_plus' for the
11 wrappers). My thanks to Dannon Baker from the Galaxy development team for his
12 assistance with this.
13
14
15 Installation
16 ============
17
18 Doing this automatically via the Galaxy Tool Shed is probably simplest.
19
20
21 History
22 =======
23
24 These versions numbers match those for 'ncbi_blast_plus', but are not used
25 explicitly in the datatypes themselves.
26
27 v0.0.11 - Final revision as part of the Galaxy main repository, and the
28 first release via the Tool Shed
29
30
31 Developers
32 ==========
33
34 BLAST+ datatypes and wrappers, and other tools are being developed on the
35 following hg branch: http://bitbucket.org/peterjc/galaxy-central/src/tools
36
37 For making the "Galaxy Tool Shed" http://community.g2.bx.psu.edu/ tarball I use
38 the following command from the Galaxy tools/ncbi_blast_plus folder:
39
40 $ tar -czf blast_datatypes.tar.gz datatypes_conf.txt datatypes_conf.xml xml.py
41
42 Check this worked:
43
44 $ tar -tzf blast_datatypes.tar.gz
45 datatypes_conf.txt
46 datatypes_conf.xml
47 xml.py
48
49
50 Licence (MIT/BSD style)
51 =======================
52
53 Permission to use, copy, modify, and distribute this software and its
54 documentation with or without modifications and for any purpose and
55 without fee is hereby granted, provided that any copyright notices
56 appear in all copies and that both those copyright notices and this
57 permission notice appear in supporting documentation, and that the
58 names of the contributors or copyright holders not be used in
59 advertising or publicity pertaining to distribution of the software
60 without specific prior permission.
61
62 THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
63 WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
64 WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
65 CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
66 OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
67 OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
68 OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE
69 OR PERFORMANCE OF THIS SOFTWARE.
70
71 NOTE: This is the licence for the Galaxy BLAST datatypes only. BLAST+
72 and associated data files are available and licenced separately.