blast_datatypes: README.rst annotate

annotate README.rst @ 17:3eada762af11 draft

planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/datatypes/blast_datatypes/ commit ed6325d44993c65dd9fbab02902ede0a9c0eeb80-dirty

author	peterjc
date	Tue, 23 Oct 2018 06:24:33 -0400
parents	63befb860c3e
children	db2480de852e

rev	line source
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	1 Galaxy datatypes for NCBI BLAST+ suite
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	2 ======================================
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	3
11 236046d1d441 Uploaded v0.0.19a, README tweaks peterjc parents: 10 diff changeset	4 These Galaxy datatypes are copyright 2010-2014 by Peter Cock (The James Hutton
236046d1d441 Uploaded v0.0.19a, README tweaks peterjc parents: 10 diff changeset	5 Institute, UK) and additional contributors including Edward Kirton, Nicola
236046d1d441 Uploaded v0.0.19a, README tweaks peterjc parents: 10 diff changeset	6 Soranzo, and Bjoern Gruening.
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	7
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	8 See the licence text below.
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	9
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	10 Note that these files (and the associated BLAST+ wrappers) were originally
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	11 distributed as part of the main Galaxy repository, but as of August 2012 moved
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	12 to the Galaxy Tool Shed as 'blast_datatypes' (and 'ncbi_blast_plus' for the
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	13 wrappers). My thanks to Dannon Baker from the Galaxy development team for his
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	14 assistance with this.
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	15
8 7ceb2ae30ff4 Uploaded v0.0.17, Add maskinfo-asn1 and maskinfo-asn1-binary sub-datatypes peterjc parents: 7 diff changeset	16 It is available from the Galaxy Tool Shed at:
7ceb2ae30ff4 Uploaded v0.0.17, Add maskinfo-asn1 and maskinfo-asn1-binary sub-datatypes peterjc parents: 7 diff changeset	17 http://toolshed.g2.bx.psu.edu/view/devteam/blast_datatypes
7ceb2ae30ff4 Uploaded v0.0.17, Add maskinfo-asn1 and maskinfo-asn1-binary sub-datatypes peterjc parents: 7 diff changeset	18
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	19
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	20 History
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	21 =======
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	22
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	23 These versions numbers initially matched those for 'ncbi_blast_plus', but are
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	24 not used explicitly in the datatypes themselves.
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	25
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	26 ======= ======================================================================
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	27 Version Changes
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	28 ------- ----------------------------------------------------------------------
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	29 v0.0.11 - Final revision as part of the Galaxy main repository, and the
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	30 first release via the Tool Shed
11 236046d1d441 Uploaded v0.0.19a, README tweaks peterjc parents: 10 diff changeset	31 v0.0.13 - Uses ``blast.py`` instead of ``xml.py`` to define the datatypes
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	32 v0.0.14 - Includes datatypes for protein and nucleotide BLAST databases
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	33 (``blastdbp`` and ``blastdbn``, based on work by Edward Kirton)
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	34 v0.0.15 - Fixes a MetadataElement bug and includes more of the optional
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	35 BLAST database files (contribution from Nicola Soranzo)
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	36 v0.0.16 - Adopt standard MIT License.
8 7ceb2ae30ff4 Uploaded v0.0.17, Add maskinfo-asn1 and maskinfo-asn1-binary sub-datatypes peterjc parents: 7 diff changeset	37 - Use reStructuredText for this README file.
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	38 - Development moved to GitHub, https://github.com/peterjc/galaxy_blast
7 a44a7a5456e1 Uploaded v0.0.16a, Nucleotide database definition aware of MegaBLAST index superheader peterjc parents: 6 diff changeset	39 - Nucleotide database definition aware of MegaBLAST index superheader
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	40 v0.0.17 - Add ``maskinfo-asn1`` and ``maskinfo-asn1-binary`` sub-datatypes
11 236046d1d441 Uploaded v0.0.19a, README tweaks peterjc parents: 10 diff changeset	41 (contribution from Nicola Soranzo)
9 e36c60d13c94 Uploaded v0.0.18, tweak display_data for running tests peterjc parents: 8 diff changeset	42 v0.0.18 - Add retries to BLAST XML merge code.
e36c60d13c94 Uploaded v0.0.18, tweak display_data for running tests peterjc parents: 8 diff changeset	43 - Modify display_data method to allow unit tests to function.
12 da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	44 v0.0.19 - Add ``blastdbd`` datatype for BLAST protein domain databases, for use
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	45 with makeprofiledb and rpsblast (contribution from Bjoern Gruening).
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	46 - Add ``pssm-asn1`` datatype for Position Specific Scoring Matrices
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	47 (PSSMs) stored in NCBI's "scoremat" ASN.1 format (usually named
12 da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	48 as ``*.smp``), used as input files for makeprofiledb.
da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	49 v0.0.20 - Added "NCBI BLAST+ integrated into Galaxy" preprint citation.
13 e96b515847dd v0.0.21 - Updated citation information with GigaScience paper peterjc parents: 12 diff changeset	50 v0.0.21 - Updated citation information with GigaScience paper.
14 623a3fbe5340 planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/datatypes/blast_datatypes/ commit 3f6b5c953d522a724bbcd403bcb86f1e2757a556-dirty peterjc parents: 13 diff changeset	51 v0.0.22 - Removed unused imports in ``blast.py`` (internal change only).
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	52 ======= ======================================================================
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	53
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	54
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	55 Installation
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	56 ============
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	57
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	58 Doing this automatically via the Galaxy Tool Shed is probably simplest.
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	59
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	60
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	61 Manual Installation
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	62 ===================
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	63
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	64 Normally you would install this via the Galaxy ToolShed, which would move
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	65 the provided ``blast.py`` file into a suitable location and process the
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	66 ``datatypes_conf.xml`` entries to be combined with your local configuration.
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	67
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	68 However, if you really want to this should work for a manual install. First
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	69 update the ``datatypes_conf.xml`` file in the Galaxy main folder by inserting
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	70 the contents of the ``<registration>`` and ``<sniffers>`` sections from the
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	71 small ``datatypes_conf.xml`` file provided in the tar-ball.
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	72
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	73 For the ``<registration>`` section you would add several ``<datatype ... />``
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	74 lines, one per new datatype::
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	75
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	76 <datatype extension="blastxml" type="galaxy.datatypes.blast:BlastXml" mimetype="application/xml" display_in_upload="true"/>
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	77 ...
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	78
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	79 Similarly, some of the new dataypes have ``<sniffer ... />`` lines used to
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	80 automatically recognise the datatype when uploaded into Galaxy::
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	81
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	82 <sniffer type="galaxy.datatypes.blast:BlastXml"/>
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	83 ...
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	84
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	85 Also create the file ``lib/galaxy/datatypes/blast.py`` by moving, copying or linking
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	86 the ``blast.py`` file provided in this tar-ball. Finally add ``import blast`` near
939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	87 the start of file ``lib/galaxy/datatypes/registry.py`` (after the other import
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	88 lines).
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	89
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	90
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	91 Bug Reports
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	92 ===========
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	93
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	94 You can file an issue here https://github.com/peterjc/galaxy_blast/issues or ask
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	95 us on the Galaxy development list http://lists.bx.psu.edu/listinfo/galaxy-dev
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	96
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	97
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	98 Developers
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	99 ==========
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	100
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	101 These BLAST+ datatypes and associated tools were originally developed on the
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	102 following hg branch: http://bitbucket.org/peterjc/galaxy-central/src/tools
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	103
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	104 As of July 2013, development is continuing on a dedicated GitHub repository:
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	105 https://github.com/peterjc/galaxy_blast
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	106
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	107 For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball I use
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	108 the following command from the ``blast_datatypes`` folder::
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	109
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	110 $ tar -czf blast_datatypes.tar.gz README.rst datatypes_conf.xml blast.py
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	111
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	112 Check this worked::
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	113
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	114 $ tar -tzf blast_datatypes.tar.gz
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	115 README.rst
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	116 datatypes_conf.xml
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	117 blast.py
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	118
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	119 For development, rather than having a local ToolShed running, I currently
10 939a600f45e9 Uploaded v0.0.19, domain databases and PSSM peterjc parents: 9 diff changeset	120 use a symlink from ``lib/galaxy/datatypes/blast.py`` to the actual file as
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	121 described above.
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	122
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	123
12 da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	124 Citation
da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	125 ========
da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	126
13 e96b515847dd v0.0.21 - Updated citation information with GigaScience paper peterjc parents: 12 diff changeset	127 Please cite the following paper:
12 da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	128
da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	129 NCBI BLAST+ integrated into Galaxy.
da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	130 P.J.A. Cock, J.M. Chilton, B. Gruening, J.E. Johnson, N. Soranzo
13 e96b515847dd v0.0.21 - Updated citation information with GigaScience paper peterjc parents: 12 diff changeset	131 GigaScience 2015, 4:39
16 63befb860c3e planemo upload for repository https://github.com/peterjc/galaxy_blast/tree/master/datatypes/blast_datatypes/ commit 1b9ec80b23b7fc9d3ed95afba3bc3b57dc3f47c2-dirty peterjc parents: 14 diff changeset	132 https://doi.org/10.1186/s13742-015-0080-7
12 da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	133
da92fef90117 Uploaded v0.0.20 with new citation information peterjc parents: 11 diff changeset	134
6 8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	135 Licence (MIT)
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	136 =============
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	137
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	138 Permission is hereby granted, free of charge, to any person obtaining a copy
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	139 of this software and associated documentation files (the "Software"), to deal
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	140 in the Software without restriction, including without limitation the rights
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	141 to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	142 copies of the Software, and to permit persons to whom the Software is
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	143 furnished to do so, subject to the following conditions:
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	144
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	145 The above copyright notice and this permission notice shall be included in
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	146 all copies or substantial portions of the Software.
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	147
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	148 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	149 IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	150 FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	151 AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	152 LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	153 OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	154 THE SOFTWARE.
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	155
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	156 NOTE: This is the licence for the Galaxy BLAST datatypes only. BLAST+
8615fd8abc04 Uploaded v0.0.16, moving to MIT license and development on GitHub. peterjc parents: diff changeset	157 and associated data files are available and licenced separately.

Mercurial > repos > devteam > blast_datatypes

annotate README.rst @ 17:3eada762af11 draft