# HG changeset patch
# User dcorreia
# Date 1474902920 14400
# Node ID b347bcd7304e532ab7f9576a6dc9f6a6b7314a86
# Parent  79998c33aa5ad7b77997720a52130a92f5fc1101
Uploaded

diff -r 79998c33aa5a -r b347bcd7304e phyml_sms.xml
--- a/phyml_sms.xml	Mon Sep 26 11:07:36 2016 -0400
+++ b/phyml_sms.xml	Mon Sep 26 11:15:20 2016 -0400
@@ -116,7 +116,9 @@
 
 This script runs SMS to select the substitution model which best fits the input data.
 It may also run PhyML with the selected model.
-SMS options :
+
+ SMS options ::
+
 	 -h = Help
 	 -i = **Mandatory** Input alignment file in PHYLIP format
 	 -d = **Mandatory** Data type : 'aa' or 'nt'
@@ -125,11 +127,14 @@
 	 -c = Statistical criterion to select the model : 'AIC' (default) or 'BIC'
 	 -u = Input starting tree (Newick format)
 	 -t = Use this option if you want SMS to infer a tree with PhyML using the SMS selected model
- PhyML options :
+
+ PhyML options ::
+
 	 -s = Type of tree improvement : 'NNI (default)' or 'SPR'
 	 -r = Number of random starting trees : 0 (default)
 	 -b = Branch Support : >0 for bootstraps, -4 for aLRT, 0 (default)
 
+
 **PhyML 20120412**
 
 -----