--- a/tool_dependencies.xml	Tue Nov 08 12:18:28 2016 -0500
+++ b/tool_dependencies.xml	Tue Nov 15 03:07:11 2016 -0500
@@ -4,7 +4,7 @@
         <repository changeset_revision="8e1916ccca9a" name="package_clustalo_1_2_1" owner="dcorreia" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="gblocks" version="0.91b">
-        <repository changeset_revision="42c0927e0ce6" name="package_gblocks_0_91b" owner="dcorreia" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="cc74017fbc04" name="package_gblocks_0_91b" owner="dcorreia" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
 	<package name="muscle" version="3.8.31">
 		<repository changeset_revision="17c53de3f872" name="package_muscle_3_8_31" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
@@ -12,6 +12,9 @@
     <package name="phyml-sms" version="1.3">
         <repository changeset_revision="244d490a5cf5" name="package_phyml_sms_1_3" owner="dcorreia" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
+    <package name="phyml" version="3.1">
+        <repository changeset_revision="48b0369fdb5b" name="package_phyml_3_1" owner="vlefort" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
     <package name="R" version="3.0.1">
         <repository changeset_revision="55b8ae401f5c" name="package_r_3_0_1" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>