Mercurial > repos > dcorreia > package_phyml_3_0

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author dcorreia
date Wed, 23 Nov 2016 11:45:38 -0500
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<?xml version="1.0"?>
<tool_dependency>
	<package name="phyml" version="3.0_360-500M">
		<install version="1.0">
			<actions_group>
			   <actions os="darwin" architecture="x86_64">
                    <action type="download_by_url">http://www.atgc-montpellier.fr/download/binaries/phyml/phyml_v3.0.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                    <action type="chmod">
                        <file mode="755">$INSTALL_DIR/bin/PhyML_3.0_macOS_i386</file>
                    </action>
                    <action type="shell_command">ln -s $INSTALL_DIR/bin/PhyML_3.0_macOS_i386 $INSTALL_DIR/bin/phyml</action>
               </actions>
			   <actions os="linux" architecture="i386">
                    <action type="download_by_url">http://www.atgc-montpellier.fr/download/binaries/phyml/phyml_v3.0.tar.gz</action>
                    <action type="move_directory_files">
                        <source_directory>.</source_directory>
                        <destination_directory>$INSTALL_DIR/bin</destination_directory>
                    </action>
                    <action type="chmod">
                        <file mode="755">$INSTALL_DIR/bin/PhyML_3.0_linux32</file>
                    </action>
                    <action type="shell_command">ln -s $INSTALL_DIR/bin/PhyML_3.0_linux32 $INSTALL_DIR/bin/phyml</action>
                </actions>
				<actions os="linux" architecture="x86_64">
					<action type="download_by_url">http://www.atgc-montpellier.fr/download/binaries/phyml/phyml_v3.0.tar.gz</action>
					<action type="move_directory_files">
						<source_directory>.</source_directory>
						<destination_directory>$INSTALL_DIR/bin</destination_directory>
					</action>
					<action type="chmod">
						<file mode="755">$INSTALL_DIR/bin/PhyML_3.0_linux64</file>
					</action>
					<action type="shell_command">ln -s $INSTALL_DIR/bin/PhyML_3.0_linux64 $INSTALL_DIR/bin/phyml</action>
				</actions>
				<action type="set_environment">
					<environment_variable name="PHYML_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
					<environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
				</action>
			</actions_group>
		</install>
	</package>
</tool_dependency>