Mercurial > repos > dcorreia > package_phyml_3_0

comparison tool_dependencies.xml @ 0:ee4abcc34037 draft default tip

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author dcorreia
date Wed, 23 Nov 2016 11:45:38 -0500
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-1:000000000000 0:ee4abcc34037
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <package name="phyml" version="3.0_360-500M">
4 <install version="1.0">
5 <actions_group>
6 <actions os="darwin" architecture="x86_64">
7 <action type="download_by_url">http://www.atgc-montpellier.fr/download/binaries/phyml/phyml_v3.0.tar.gz</action>
8 <action type="move_directory_files">
9 <source_directory>.</source_directory>
10 <destination_directory>$INSTALL_DIR/bin</destination_directory>
11 </action>
12 <action type="chmod">
13 <file mode="755">$INSTALL_DIR/bin/PhyML_3.0_macOS_i386</file>
14 </action>
15 <action type="shell_command">ln -s $INSTALL_DIR/bin/PhyML_3.0_macOS_i386 $INSTALL_DIR/bin/phyml</action>
16 </actions>
17 <actions os="linux" architecture="i386">
18 <action type="download_by_url">http://www.atgc-montpellier.fr/download/binaries/phyml/phyml_v3.0.tar.gz</action>
19 <action type="move_directory_files">
20 <source_directory>.</source_directory>
21 <destination_directory>$INSTALL_DIR/bin</destination_directory>
22 </action>
23 <action type="chmod">
24 <file mode="755">$INSTALL_DIR/bin/PhyML_3.0_linux32</file>
25 </action>
26 <action type="shell_command">ln -s $INSTALL_DIR/bin/PhyML_3.0_linux32 $INSTALL_DIR/bin/phyml</action>
27 </actions>
28 <actions os="linux" architecture="x86_64">
29 <action type="download_by_url">http://www.atgc-montpellier.fr/download/binaries/phyml/phyml_v3.0.tar.gz</action>
30 <action type="move_directory_files">
31 <source_directory>.</source_directory>
32 <destination_directory>$INSTALL_DIR/bin</destination_directory>
33 </action>
34 <action type="chmod">
35 <file mode="755">$INSTALL_DIR/bin/PhyML_3.0_linux64</file>
36 </action>
37 <action type="shell_command">ln -s $INSTALL_DIR/bin/PhyML_3.0_linux64 $INSTALL_DIR/bin/phyml</action>
38 </actions>
39 <action type="set_environment">
40 <environment_variable name="PHYML_ROOT_PATH" action="set_to">$INSTALL_DIR</environment_variable>
41 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
42 </action>
43 </actions_group>
44 </install>
45 </package>
46 </tool_dependency>