Mercurial > repos > davidvanzessen > vidjil_with_browser

changeset 3:e7dc253f92a2 draft

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Uploaded
author davidvanzessen
date Tue, 09 Dec 2014 04:08:17 -0500
parents 7c939eea3dfb
children 786aacc84ac8
files vidjil.xml
diffstat 1 files changed, 9 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/vidjil.xml	Tue Dec 09 04:04:26 2014 -0500
+++ b/vidjil.xml	Tue Dec 09 04:08:17 2014 -0500
@@ -4,7 +4,7 @@
 		vidjil.sh $in_file $out_file $out_file.files_path $database $limit_reads $limit_ratio
 	</command>
 	<inputs>
-		<param name="in_file" type="data" format="fasta" label="Data to Process" />
+		<param name="in_file" type="data" format="fasta,fastq" label="Data to Process" />
 		<param name="database" type="select" label="Database">
 			<option value="current">Germline database from IMGT of 30-9-14</option>
 			<option value="download">Download newest database from IMGT</option>
@@ -16,10 +16,13 @@
 		<data format="html" name="out_file" />
 	</outputs>
 	<help>
-		A Galaxy wrapper for Vidijl and Vidjil browser
-		**Reference**
-		Mathieu Giraud, Mikaël Salson, Marc Duez, Céline Villenet, Sabine Quief, Aurélie Caillault, Nathalie Grardel, Christophe Roumier, Claude Preudhomme, Martin Figeac, Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing, BMC Genomics, 15:409, doi:10.1186/1471-2164-15-409
-		**Website**
-		http://bioinfo.lifl.fr/vidjil/
+A Galaxy wrapper for Vidijl and the Vidjil browser for analysis and visualization of **FASTA** and **FASTQ** files.
+
+**Reference:**
+
+Mathieu Giraud, Mikaël Salson, Marc Duez, Céline Villenet, Sabine Quief, Aurélie Caillault, Nathalie Grardel, Christophe Roumier, Claude Preudhomme, Martin Figeac, Fast multiclonal clusterization of V(D)J recombinations from high-throughput sequencing, BMC Genomics, 15:409, doi:10.1186/1471-2164-15-409
+**Website:**
+
+http://bioinfo.lifl.fr/vidjil/
 	</help>
 </tool>