Mercurial > repos > davidvanzessen > vidjil_with_browser
diff germline/IGHD.fa @ 0:fe4001bdf8d4 draft
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author | davidvanzessen |
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date | Tue, 09 Dec 2014 03:55:01 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/germline/IGHD.fa Tue Dec 09 03:55:01 2014 -0500 @@ -0,0 +1,88 @@ +>X97051|IGHD1-1*01|Homo sapiens|F|D-REGION|33714..33730|17 nt|1| | | | |17+0=17| |rev-compl| +ggtacaactggaacgac +>X13972|IGHD1-14*01|Homo sapiens|ORF|D-REGION|14518..14534|17 nt|1| | | | |17+0=17| |rev-compl| +ggtataaccggaaccac +>X97051|IGHD1-20*01|Homo sapiens|F|D-REGION|62015..62031|17 nt|1| | | | |17+0=17| |rev-compl| +ggtataactggaacgac +>X97051|IGHD1-26*01|Homo sapiens|F|D-REGION|72169..72188|20 nt|1| | | | |20+0=20| |rev-compl| +ggtatagtgggagctactac +>X13972|IGHD1-7*01|Homo sapiens|F|D-REGION|5266..5282|17 nt|1| | | | |17+0=17| |rev-compl| +ggtataactggaactac +>X55575|IGHD1/OR15-1a*01|Homo sapiens|ORF|D-REGION|63..79|17 nt|1| | | | |17+0=17| |rev-compl| +ggtataactggaacaac +>X55576|IGHD1/OR15-1b*01|Homo sapiens|ORF|D-REGION|63..79|17 nt|1| | | | |17+0=17| |rev-compl| +ggtataactggaacaac +>J00234|IGHD2-15*01|Homo sapiens|F|D-REGION|29..59|31 nt|1| | | | |31+0=31| |rev-compl| +aggatattgtagtggtggtagctgctactcc +>J00232|IGHD2-2*01|Homo sapiens|F|D-REGION|29..59|31 nt|1| | | | |31+0=31| |rev-compl| +aggatattgtagtagtaccagctgctatgcc +>X97051|IGHD2-2*02|Homo sapiens|F|D-REGION|36367..36397|31 nt|1| | | | |31+0=31| |rev-compl| +aggatattgtagtagtaccagctgctatacc +>M35648|IGHD2-2*03|Homo sapiens|F|D-REGION|70..100|31 nt|1| | | | |31+0=31| |rev-compl| +tggatattgtagtagtaccagctgctatgcc +>J00235|IGHD2-21*01|Homo sapiens|F|D-REGION|29..56|28 nt|1| | | | |28+0=28| |rev-compl| +agcatattgtggtggtgattgctattcc +>X97051|IGHD2-21*02|Homo sapiens|F|D-REGION|64644..64671|28 nt|1| | | | |28+0=28| |rev-compl| +agcatattgtggtggtgactgctattcc +>X13972|IGHD2-8*01|Homo sapiens|F|D-REGION|7949..7979|31 nt|1| | | | |31+0=31| |rev-compl| +aggatattgtactaatggtgtatgctatacc +>J00233|IGHD2-8*02|Homo sapiens|F|D-REGION|29..59|31 nt|1| | | | |31+0=31| |rev-compl| +aggatattgtactggtggtgtatgctatacc +>X55577|IGHD2/OR15-2a*01|Homo sapiens|ORF|D-REGION|68..98|31 nt|1| | | | |31+0=31| |rev-compl| +agaatattgtaatagtactactttctatgcc +>X55578|IGHD2/OR15-2b*01|Homo sapiens|ORF|D-REGION|68..98|31 nt|1| | | | |31+0=31| |rev-compl| +agaatattgtaatagtactactttctatgcc +>X13972|IGHD3-10*01|Homo sapiens|F|D-REGION|10659..10689|31 nt|1| | | | |31+0=31| |rev-compl| +gtattactatggttcggggagttattataac +>X93615|IGHD3-10*02|Homo sapiens|F|D-REGION|30..59|30 nt|1| | | | |30+0=30| |rev-compl| +gtattactatgttcggggagttattataac +>X93614|IGHD3-16*01|Homo sapiens|F|D-REGION|30..66|37 nt|1| | | | |37+0=37| |rev-compl| +gtattatgattacgtttgggggagttatgcttatacc +>X97051|IGHD3-16*02|Homo sapiens|F|D-REGION|57552..57588|37 nt|1| | | | |37+0=37| |rev-compl| +gtattatgattacgtttgggggagttatcgttatacc +>X93616|IGHD3-22*01|Homo sapiens|F|D-REGION|30..60|31 nt|1| | | | |31+0=31| |rev-compl| +gtattactatgatagtagtggttattactac +>X13972|IGHD3-3*01|Homo sapiens|F|D-REGION|804..834|31 nt|1| | | | |31+0=31| |rev-compl| +gtattacgatttttggagtggttattatacc +>X93618|IGHD3-3*02|Homo sapiens|F|D-REGION|30..60|31 nt|1| | | | |31+0=31| |rev-compl| +gtattagcatttttggagtggttattatacc +>X13972|IGHD3-9*01|Homo sapiens|F|D-REGION|10475..10505|31 nt|1| | | | |31+0=31| |rev-compl| +gtattacgatattttgactggttattataac +>X55579|IGHD3/OR15-3a*01|Homo sapiens|ORF|D-REGION|210..240|31 nt|1| | | | |31+0=31| |rev-compl| +gtattatgatttttggactggttattatacc +>X55580|IGHD3/OR15-3b*01|Homo sapiens|ORF|D-REGION|210..240|31 nt|1| | | | |31+0=31| |rev-compl| +gtattatgatttttggactggttattatacc +>X13972|IGHD4-11*01|Homo sapiens|ORF|D-REGION|11550..11565|16 nt|1| | | | |16+0=16| |rev-compl| +tgactacagtaactac +>X97051|IGHD4-17*01|Homo sapiens|F|D-REGION|58699..58714|16 nt|1| | | | |16+0=16| |rev-compl| +tgactacggtgactac +>X97051|IGHD4-23*01|Homo sapiens|ORF|D-REGION|68334..68352|19 nt|1| | | | |19+0=19| |rev-compl| +tgactacggtggtaactcc +>X13972|IGHD4-4*01|Homo sapiens|F|D-REGION|1952..1967|16 nt|1| | | | |16+0=16| |rev-compl| +tgactacagtaactac +>X55581|IGHD4/OR15-4a*01|Homo sapiens|ORF|D-REGION|83..101|19 nt|1| | | | |19+0=19| |rev-compl| +tgactatggtgctaactac +>X55582|IGHD4/OR15-4b*01|Homo sapiens|ORF|D-REGION|82..100|19 nt|1| | | | |19+0=19| |rev-compl| +tgactatggtgctaactac +>X13972|IGHD5-12*01|Homo sapiens|F|D-REGION|12506..12528|23 nt|1| | | | |23+0=23| |rev-compl| +gtggatatagtggctacgattac +>X97051|IGHD5-18*01|Homo sapiens|F|D-REGION|59661..59680|20 nt|1| | | | |20+0=20| |rev-compl| +gtggatacagctatggttac +>X97051|IGHD5-24*01|Homo sapiens|ORF|D-REGION|69300..69319|20 nt|1| | | | |20+0=20| |rev-compl| +gtagagatggctacaattac +>X13972|IGHD5-5*01|Homo sapiens|F|D-REGION|2913..2932|20 nt|1| | | | |20+0=20| |rev-compl| +gtggatacagctatggttac +>X55583|IGHD5/OR15-5a*01|Homo sapiens|ORF|D-REGION|94..116|23 nt|1| | | | |23+0=23| |rev-compl| +gtggatatagtgtctacgattac +>X55584|IGHD5/OR15-5b*01|Homo sapiens|ORF|D-REGION|94..116|23 nt|1| | | | |23+0=23| |rev-compl| +gtggatatagtgtctacgattac +>X13972|IGHD6-13*01|Homo sapiens|F|D-REGION|14011..14031|21 nt|1| | | | |21+0=21| |rev-compl| +gggtatagcagcagctggtac +>X97051|IGHD6-19*01|Homo sapiens|F|D-REGION|61503..61523|21 nt|1| | | | |21+0=21| |rev-compl| +gggtatagcagtggctggtac +>X97051|IGHD6-25*01|Homo sapiens|F|D-REGION|71666..71683|18 nt|1| | | | |18+0=18| |rev-compl| +gggtatagcagcggctac +>X13972|IGHD6-6*01|Homo sapiens|F|D-REGION|4762..4779|18 nt|1| | | | |18+0=18| |rev-compl| +gagtatagcagctcgtcc +>J00256|IGHD7-27*01|Homo sapiens|F|D-REGION|621..631|11 nt|1| | | | |11+0=11| |rev-compl| +ctaactgggga