Mercurial > repos > davidvanzessen > test_plotting_merged

comparison r_wrapper.sh @ 4:10cfa5e9186e draft

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Uploaded
author davidvanzessen
date Mon, 14 Oct 2013 08:12:41 -0400
parents 0e6f33e21c60
children
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3:d27d745d0556 4:10cfa5e9186e
19 echo "<table border='1'>" >> $outputFile 19 echo "<table border='1'>" >> $outputFile
20 for sample in $samples; do 20 for sample in $samples; do
21 echo "<tr><td colspan='3' height='100'></td>" >> $outputFile 21 echo "<tr><td colspan='3' height='100'></td>" >> $outputFile
22 echo "<tr><td colspan='3'><h1>$sample</h1></td></tr>" >> $outputFile 22 echo "<tr><td colspan='3'><h1>$sample</h1></td></tr>" >> $outputFile
23 echo "<tr><td><h2>V-D Heatmap:</h2></td><td><h2>V-J Heatmap:</h2></td><td><h2>D-J Heatmap:</h2></td></tr><tr>" >> $outputFile 23 echo "<tr><td><h2>V-D Heatmap:</h2></td><td><h2>V-J Heatmap:</h2></td><td><h2>D-J Heatmap:</h2></td></tr><tr>" >> $outputFile
24 mv "$outputDir/HeatmapVD$count.png" "$outputDir/VD_$sample.png" 24 mv "$outputDir/HeatmapVD_$sample.png" "$outputDir/VD_$sample.png"
25 echo "<td><img src='VD_$sample.png'/></td>" >> $outputFile 25 echo "<td><img src='VD_$sample.png'/></td>" >> $outputFile
26 mv "$outputDir/HeatmapVJ$count.png" "$outputDir/VJ_$sample.png" 26 mv "$outputDir/HeatmapVJ_$sample.png" "$outputDir/VJ_$sample.png"
27 echo "<td><img src='VJ_$sample.png'/></td>" >> $outputFile 27 echo "<td><img src='VJ_$sample.png'/></td>" >> $outputFile
28 mv "$outputDir/HeatmapDJ$count.png" "$outputDir/DJ_$sample.png" 28 mv "$outputDir/HeatmapDJ_$sample.png" "$outputDir/DJ_$sample.png"
29 echo "<td><img src='DJ_$sample.png'/></td></tr>" >> $outputFile 29 echo "<td><img src='DJ_$sample.png'/></td></tr>" >> $outputFile
30 count=$((count+1)) 30 count=$((count+1))
31 done 31 done
32 echo "</table>" >> $outputFile 32 echo "</table>" >> $outputFile
33 33