Mercurial > repos > davidvanzessen > plotting_merged
comparison plotting_merged.xml @ 30:bdf048a0b414 draft
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| author | davidvanzessen |
|---|---|
| date | Fri, 08 Nov 2013 05:29:02 -0500 |
| parents | e920d28843b6 |
| children | 2e2a29d505c7 |
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| 29:1c25c75d863d | 30:bdf048a0b414 |
|---|---|
| 1 <tool id="plotting_merged" name="Plotting the merged data" version="1.0"> | 1 <tool id="plotting_merged" name="Plotting the merged data" version="1.0"> |
| 2 <description>Creating a graph of the merged reports.</description> | 2 <description>Creating a graph of the merged reports.</description> |
| 3 <command interpreter="bash"> | 3 <command interpreter="bash"> |
| 4 r_wrapper.sh $in_file $out_file | 4 r_wrapper.sh $in_file $out_file $out_file.files_path |
| 5 </command> | 5 </command> |
| 6 <inputs> | 6 <inputs> |
| 7 <param name="in_file" format="tabular" type="data" label="Data to Process" /> | 7 <param name="in_file" format="tabular" type="data" label="Data to Process" /> |
| 8 </inputs> | 8 </inputs> |
| 9 <outputs> | 9 <outputs> |
| 10 <data format="png" name="out_file" /> | 10 <data format="html" name="out_file" /> |
| 11 </outputs> | 11 </outputs> |
| 12 <requirements> | |
| 13 <requirement type="package" version="2.15.1">R</requirement> | |
| 14 </requirements> | |
| 15 <help> | 12 <help> |
| 16 Creating a graph of the merged and parsed igblast reports. | 13 Step 4 of the Immune Repertoire tools, plots the merged data, generating 3 bar charts for V, D and J frequencies and 3 heatmaps for every sample (V-D, V-J, D-J) |
| 17 </help> | 14 </help> |
| 18 </tool> | 15 </tool> |