Mercurial > repos > davidvanzessen > plotting_merged

comparison r_wrapper.sh @ 43:1b3ef7b2f4a0 draft

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Uploaded
author davidvanzessen
date Fri, 22 Nov 2013 07:56:51 -0500
parents 46c5d9d396a5
children dea2d3353a42
comparison
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42:af2834de221c 43:1b3ef7b2f4a0
15 echo "<img src='DPlot.png'/>" >> $2 15 echo "<img src='DPlot.png'/>" >> $2
16 echo "<img src='JPlot.png'/>" >> $2 16 echo "<img src='JPlot.png'/>" >> $2
17 17
18 samples=`cat $outputDir/samples.txt` 18 samples=`cat $outputDir/samples.txt`
19 count=1 19 count=1
20 echo "<table border='1'>" >> $outputFile 20 echo "<table border='1'><caption><h3>$clonalType</h3><caption>" >> $outputFile
21 for sample in $samples; do 21 for sample in $samples; do
22 echo "<tr><td colspan='3' height='100'></td>" >> $outputFile 22 echo "<tr><td colspan='3' height='100'></td>" >> $outputFile
23 echo "<tr><td colspan='3'><h1>$sample</h1></td></tr>" >> $outputFile 23 echo "<tr><td colspan='3'><h1>$sample</h1></td></tr>" >> $outputFile
24 echo "<tr><td><h2>V-D Heatmap:</h2></td><td><h2>V-J Heatmap:</h2></td><td><h2>D-J Heatmap:</h2></td></tr><tr>" >> $outputFile 24 echo "<tr><td><h2>V-D Heatmap:</h2></td><td><h2>V-J Heatmap:</h2></td><td><h2>D-J Heatmap:</h2></td></tr><tr>" >> $outputFile
25 mv "$outputDir/HeatmapVD_$sample.png" "$outputDir/VD_$sample.png" 25 mv "$outputDir/HeatmapVD_$sample.png" "$outputDir/VD_$sample.png"