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1 <tool id="plotting_merged" name="Plotting the merged data" version="1.0">
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2 <description>Creating a graph of the merged reports.</description>
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3 <command interpreter="bash">
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4 r_wrapper.sh $in_file $out_file $out_file.files_path
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5 </command>
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6 <inputs>
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7 <param name="in_file" format="tabular" type="data" label="Data to Process" />
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8 </inputs>
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9 <outputs>
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10 <data format="html" name="out_file" />
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11 </outputs>
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12 <help>
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13 Step 4 of the Immune Repertoire tools, plots the merged data, generating 3 bar charts for V, D and J frequencies and 3 heatmaps for every sample (V-D, V-J, D-J)
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14 </help>
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15 </tool>
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