Mercurial > repos > davidvanzessen > mutation_analysis
changeset 48:d09b1bdfd388 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Thu, 12 Nov 2015 09:46:37 -0500 |
| parents | 099cc1254f74 |
| children | 5c6b9e99d576 |
| files | merge_and_filter.r |
| diffstat | 1 files changed, 6 insertions(+), 6 deletions(-) [+] |
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--- a/merge_and_filter.r Mon Nov 09 07:21:09 2015 -0500 +++ b/merge_and_filter.r Thu Nov 12 09:46:37 2015 -0500 @@ -13,12 +13,12 @@ functionality=args[10] unique_type=args[11] -summ = read.table(summaryfile, header=T, sep="\t", fill=T, stringsAsFactors=F) -sequences = read.table(sequencesfile, header=T, sep="\t", fill=T, stringsAsFactors=F) -mutationanalysis = read.table(mutationanalysisfile, header=T, sep="\t", fill=T, stringsAsFactors=F) -mutationstats = read.table(mutationstatsfile, header=T, sep="\t", fill=T, stringsAsFactors=F) -hotspots = read.table(hotspotsfile, header=T, sep="\t", fill=T, stringsAsFactors=F) -gene_identification = read.table(gene_identification_file, header=T, sep="\t", fill=T, stringsAsFactors=F) +summ = read.table(summaryfile, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="") +sequences = read.table(sequencesfile, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="") +mutationanalysis = read.table(mutationanalysisfile, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="") +mutationstats = read.table(mutationstatsfile, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="") +hotspots = read.table(hotspotsfile, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="") +gene_identification = read.table(gene_identification_file, header=T, sep="\t", fill=T, stringsAsFactors=F, quote="") if(method == "blastn"){ "qseqid\tsseqid\tpident\tlength\tmismatch\tgapopen\tqstart\tqend\tsstart\tsend\tevalue\tbitscore"