Mercurial > repos > davidvanzessen > mutation_analysis
changeset 77:c5c86d15cb94 draft
Uploaded
author | davidvanzessen |
---|---|
date | Mon, 09 May 2016 03:56:38 -0400 |
parents | becea91089ed |
children | b523ce95d857 |
files | sequence_overview.r wrapper.sh |
diffstat | 2 files changed, 2 insertions(+), 0 deletions(-) [+] |
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--- a/sequence_overview.r Mon May 09 03:45:39 2016 -0400 +++ b/sequence_overview.r Mon May 09 03:56:38 2016 -0400 @@ -38,6 +38,7 @@ tbl = function(df) { res = "<table border='1'>"; for(i in 1:nrow(df)){ res = paste(res, tr(df[i,]), sep=""); }; res = paste(res, "</table>"); } cat("<table border='1'>", file=main.html, append=F) +cat("<caption>CDR1+CDR2+CDR3+FR2+FR3 sequences that show up more than once</caption>", file=main.html, append=T) cat("<tr><th>Sequence</th><th>ca1</th><th>ca2</th><th>cg1</th><th>cg2</th><th>cg3</th><th>cg4</th><th>cm</th></tr>", file=main.html, append=T) for(i in 1:nrow(dat)){
--- a/wrapper.sh Mon May 09 03:45:39 2016 -0400 +++ b/wrapper.sh Mon May 09 03:56:38 2016 -0400 @@ -164,6 +164,7 @@ echo "<a href='mutation_by_id.txt'>mutations by id</a><br />" >> $output echo "<a href='aa_id_mutations.txt'>AA mutations location by id</a><br />" >> $output echo "<a href='absent_aa_id.txt'>Absant AA locations by id</a><br />" >> $output +echo "<a href='sequence_overview/index.html'>Sequence Overview</a><br />" >> $output echo "---------------- images ----------------"