Mercurial > repos > davidvanzessen > mutation_analysis
changeset 1:856b5b718d21 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Mon, 18 Aug 2014 04:42:59 -0400 |
| parents | 74d2bc479bee |
| children | 2f4298673519 |
| files | mutation_analysis.xml wrapper.sh |
| diffstat | 2 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/mutation_analysis.xml Mon Aug 18 04:04:37 2014 -0400 +++ b/mutation_analysis.xml Mon Aug 18 04:42:59 2014 -0400 @@ -1,7 +1,7 @@ <tool id="mutation_analysis_shm" name="Mutation Analysis" version="1.0"> <description></description> <command interpreter="bash"> - wrapper.sh $in_file $out_file $out_file.files_path + wrapper.sh $in_file $out_file $out_file.files_path ${in_file.name} </command> <inputs> <param name="in_file" type="data" label="IMGT zip file to be analysed" />
--- a/wrapper.sh Mon Aug 18 04:04:37 2014 -0400 +++ b/wrapper.sh Mon Aug 18 04:42:59 2014 -0400 @@ -4,6 +4,7 @@ input=$1 output=$2 outdir=$3 +title=$4 mkdir $outdir unzip $input -d $PWD/files/ > $PWD/unziplog.log @@ -74,7 +75,7 @@ all_n=`cat $outdir/n.txt` -echo "<html><table border='1'>" > $output +echo "<html><center><h1>$title</h1></center><table border='1'>" > $output echo "<tr><th>info</th>" >> $output echo "<th><a href='identification/ca.txt'>ca (N = $ca_n)</a></th>" >> $output echo "<th><a href='identification/ca1.txt'>ca1 (N = $ca1_n)</a></th>" >> $output