Mercurial > repos > davidvanzessen > mutation_analysis

changeset 61:64e6a7803e07 draft

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Uploaded
author davidvanzessen
date Fri, 18 Mar 2016 08:17:08 -0400
parents 1558fbbc19ef
children 4262e880472d
files gene_identification.py
diffstat 1 files changed, 1 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/gene_identification.py	Fri Mar 18 08:02:50 2016 -0400
+++ b/gene_identification.py	Fri Mar 18 08:17:08 2016 -0400
@@ -199,7 +199,7 @@
 				else: #cg4 gene
 					o.write(ID + "\tcg4\t" + str(int(cg4hits / varsInCG * 100)) + "\t" + str(int(cghits / possiblecg * 100)) + "\t" + start_location[ID + "_cg"] + "\n")
 			else: #its a cm gene
-				o.write(ID + "\tcm\t0\t" + str(int(cmhits / possiblecm * 100)) + "\t" + start_location[ID + "_cg"] + "\n")
+				o.write(ID + "\tcm\t100\t" + str(int(cmhits / possiblecm * 100)) + "\t" + start_location[ID + "_cg"] + "\n")
 			seq_write_count += 1
 
 print "Time: %i" % (int(time.time() * 1000) - starttime)