Mercurial > repos > davidvanzessen > mutation_analysis
changeset 29:57d197f149c3 draft
Uploaded
author | davidvanzessen |
---|---|
date | Thu, 09 Apr 2015 04:56:43 -0400 |
parents | 362ef99f9405 |
children | 7e44617c9ca4 |
files | aa_histogram.r |
diffstat | 1 files changed, 5 insertions(+), 0 deletions(-) [+] |
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--- a/aa_histogram.r Wed Apr 08 10:14:46 2015 -0400 +++ b/aa_histogram.r Thu Apr 09 04:56:43 2015 -0400 @@ -14,6 +14,11 @@ m = ggplot(dat_dt, aes(x=i, y=freq)) + theme(axis.text.x = element_text(angle = 90, hjust = 1)) m = m + geom_histogram(stat="identity", colour = "black", fill = "darkgrey", alpha=0.8) + scale_x_continuous(breaks=1:length(dat_freq), labels=1:length(dat_freq)) +m = m + annotate("segment", x = 0.5, y = -0.3, xend=26.5, yend=-0.3, colour="darkgreen", size=1) + annotate("text", x = 13, y = -0.2, label="FR1") +m = m + annotate("segment", x = 26.5, y = -0.4, xend=38.5, yend=-0.4, colour="darkblue", size=1) + annotate("text", x = 32.5, y = -0.3, label="CDR1") +m = m + annotate("segment", x = 38.5, y = -0.3, xend=55.5, yend=-0.3, colour="darkgreen", size=1) + annotate("text", x = 47, y = -0.2, label="FR2") +m = m + annotate("segment", x = 55.5, y = -0.4, xend=65.5, yend=-0.4, colour="darkblue", size=1) + annotate("text", x = 60.5, y = -0.3, label="CDR2") +m = m + annotate("segment", x = 65.5, y = -0.3, xend=104.5, yend=-0.3, colour="darkgreen", size=1) + annotate("text", x = 85, y = -0.2, label="FR3") write.table(dat_dt, paste(dirname(outfile), "/aa_histogram.txt", sep=""), sep="\t",quote=F,row.names=F,col.names=T) png(filename=outfile, width=1280, height=720)