Mercurial > repos > davidvanzessen > mutation_analysis
changeset 6:3c2230868300 draft
Uploaded
| author | davidvanzessen |
|---|---|
| date | Wed, 11 Mar 2015 06:01:45 -0400 |
| parents | 71a12810eff3 |
| children | cb7c65e3e43f |
| files | merge_and_filter.r |
| diffstat | 1 files changed, 2 insertions(+), 1 deletions(-) [+] |
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--- a/merge_and_filter.r Tue Sep 23 07:50:35 2014 -0400 +++ b/merge_and_filter.r Wed Mar 11 06:01:45 2015 -0400 @@ -47,7 +47,8 @@ result$JGene = gsub("^Homsap ", "", result$J.GENE.and.allele) result$JGene = gsub("[*].*", "", result$JGene) -result$past = paste(result$AA.JUNCTION, result$VGene, result$JGene, (result$FR1.IMGT.Nb.of.mutations + result$CDR1.IMGT.Nb.of.mutations + result$FR2.IMGT.Nb.of.mutations + result$CDR2.IMGT.Nb.of.mutations + result$FR3.IMGT.Nb.of.mutations), result$best_match) +#result$past = paste(result$AA.JUNCTION, result$VGene, result$JGene, (result$FR1.IMGT.Nb.of.mutations + result$CDR1.IMGT.Nb.of.mutations + result$FR2.IMGT.Nb.of.mutations + result$CDR2.IMGT.Nb.of.mutations + result$FR3.IMGT.Nb.of.mutations), result$best_match) +result$past = paste(result$AA.JUNCTION, result$VGene, result$best_match) result = result[!duplicated(result$past), ]