# HG changeset patch
# User davidvanzessen
# Date 1446475680 18000
# Node ID 9afd8430de2cadef1b3b6252ffd201a053f59ce8
# Parent  1b45c7d7d94175f878c39eadd83fe77940ca572d
Uploaded

diff -r 1b45c7d7d941 -r 9afd8430de2c mutation_analysis.r
--- a/mutation_analysis.r	Mon Nov 02 09:20:13 2015 -0500
+++ b/mutation_analysis.r	Mon Nov 02 09:48:00 2015 -0500
@@ -95,7 +95,13 @@
                     "CDR1.IMGT.c.a",
                     "CDR2.IMGT.c.g",
                     "CDR2.IMGT.c.a",
-                    "FR1.IMGT.c.t")
+                    "FR1.IMGT.c.t",
+                    "FR1.IMGT.Nb.of.silent.mutations",
+                    "FR2.IMGT.Nb.of.silent.mutations",
+                    "FR3.IMGT.Nb.of.silent.mutations",
+                    "FR1.IMGT.Nb.of.nonsilent.mutations",
+                    "FR2.IMGT.Nb.of.nonsilent.mutations",
+                    "FR3.IMGT.Nb.of.nonsilent.mutations")
 
 for(col in cleanup_columns){
   dat[,col] = gsub("\\(.*\\)", "", dat[,col])